Evidence map›Paper›PMID 37771498›Full record

ArticleFrontiers in plant science2023

Genetic diversity and signature of divergence in the genome of grapevine clones of Southern Italy varieties.

Clizia Villano, Silvia Procino, Giuseppe Blaiotta, Domenico Carputo, Nunzio D'Agostino, Ermanno Di Serio, Valentina Fanelli, Pierfederico La Notte, Monica Marilena Miazzi, Cinzia Montemurro and 2 more

Open access · goldAbstract read
In one paragraph

Article in Frontiers in plant science, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
5.2field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. Review
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  4. Genetic variation and synonymous cultivars in the USDA lychee (Genetic resources and crop evolution · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 6 institutions in 1 country.

Clizia VillanoDepartment of Agricultural Sciences, University of Naples Federico II, Portici, Italy.
Silvia ProcinoDepartment of Soil, Plant and Food Sciences, University of Bari Aldo Moro, Bari, Italy.
Giuseppe BlaiottaDepartment of Agricultural Sciences, University of Naples Federico II, Portici, Italy.
Domenico CarputoDepartment of Agricultural Sciences, University of Naples Federico II, Portici, Italy.
Nunzio D'AgostinoDepartment of Agricultural Sciences, University of Naples Federico II, Portici, Italy.
Ermanno Di SerioDepartment of Agricultural Sciences, University of Naples Federico II, Portici, Italy.
Valentina FanelliDepartment of Soil, Plant and Food Sciences, University of Bari Aldo Moro, Bari, Italy.
Pierfederico La NotteSupport Unit Bari, Institute for Sustainable Plant Protection, National Research Council of Italy (CNR), Bari, Italy.
Monica Marilena MiazziDepartment of Soil, Plant and Food Sciences, University of Bari Aldo Moro, Bari, Italy.
Cinzia MontemurroDepartment of Soil, Plant and Food Sciences, University of Bari Aldo Moro, Bari, Italy.
Francesca TarantoInstitute of Biosciences and Bioresources (CNR-IBBR), Bari, Italy.
Riccardo AversanoDepartment of Agricultural Sciences, University of Naples Federico II, Portici, Italy.
University of Naples Federico II · ITFederico II University Hospital · ITInstitute of Biosciences and Bioresources · ITUniversity of Bari Aldo Moro · ITInstitute for Sustainable Plant Protection · ITNational Research Council · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Sexual reproduction has contributed to a significant degree of variability in cultivated grapevine populations. However, the additional influence of spontaneous somatic mutations has played a pivotal role in shaping the diverse landscape of grapevine agrobiodiversity. These naturally occurring selections, termed 'clones,' represent a vast reservoir of potentially valuable traits and alleles that hold promise for enhancing grape quality and bolstering plant resilience against environmental and biotic challenges. Despite their potential, many of these clones remain largely untapped.In light of this context, this study aims to delve into the population structure, genetic diversity, and distinctive genetic loci within a collection of 138 clones derived from six Campanian and Apulian grapevine varieties, known for their desirable attributes in viticulture and winemaking. Employing two reduced representation sequencing methods, we extracted Single-Nucleotide Polymorphism (SNP) markers. Population structure analysis and fixation index (FST) calculations were conducted both between populations and at individual loci. Notably, varieties originating from the same geographical region exhibited pronounced genetic similarity.The resulting SNP dataset facilitated the identification of approximately two hundred loci featuring divergent markers (FST ≥ 0.80) within annotated exons. Several of these loci exhibited associations with essential traits like phenotypic adaptability and environmental responsiveness, offering compelling opportunities for grapevine breeding initiatives. By shedding light on the genetic variability inherent in these treasured traditional grapevines, our study contributes to the broader understanding of their potential. Importantly, it underscores the urgency of preserving and characterizing these valuable genetic resources to safeguard their intra-varietal diversity and foster future advancements in grapevine cultivation.

Indexed as

divergent locidouble digest restriction associated DNAgenotyping by sequencingintra-varietal diversitymolecular markersVitis vinifera

Identifiers

PMID37771498
PMCPMC10525710
OpenAlexW4386708194

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.