Evidence map›Paper›PMID 37770698›Full record

ArticleNature chemical biology2024

Distinct chemical environments in biomolecular condensates.

Henry R Kilgore, Peter G Mikhael, Kalon J Overholt, Ann Boija, Nancy M Hannett, Catherine Van Dongen, Tong Ihn Lee, Young-Tae Chang, Regina Barzilay, Richard A Young

Erratum issuedAbstract read
In one paragraph

Article in Nature chemical biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 68 papers.

0numbers the graph read from it
0cells of the map it votes in
68citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

68 citing papers in PubMed.

  1. Review
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  6. Review
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  8. Subcellular localization as a driver of protein function.Nature reviews. Molecular cell biology · 2026
    Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Biomolecular Condensates Dictate the Folding Landscape of Proteins.bioRxiv : the preprint server for biology · 2026
    Article

8 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors.

Henry R Kilgore *Whitehead Institute for Biomedical Research, Cambridge, MA, USA. hkilgore@wi.mit.edu.ORCID 0000-0003-4851-9656
Peter G Mikhael *Department of Electrical Engineering and Computer Science, Massachusetts Institute of Technology, Cambridge, MA, USA.ORCID 0000-0002-6030-1636
Kalon J Overholt *Whitehead Institute for Biomedical Research, Cambridge, MA, USA.ORCID 0000-0001-9127-9112
Ann BoijaWhitehead Institute for Biomedical Research, Cambridge, MA, USA.
Nancy M HannettWhitehead Institute for Biomedical Research, Cambridge, MA, USA.
Catherine Van DongenWhitehead Institute for Biomedical Research, Cambridge, MA, USA.ORCID 0000-0003-2291-0948
Tong Ihn LeeWhitehead Institute for Biomedical Research, Cambridge, MA, USA.ORCID 0000-0003-1847-0898
Young-Tae ChangDepartment of Chemistry, Pohang University of Science and Technology, Pohang, Republic of Korea.ORCID 0000-0002-1927-3688
Regina BarzilayDepartment of Electrical Engineering and Computer Science, Massachusetts Institute of Technology, Cambridge, MA, USA.
Richard A YoungWhitehead Institute for Biomedical Research, Cambridge, MA, USA. young@wi.mit.edu.ORCID 0000-0001-8855-8647

Funding

Targeting Genomic Instability and Evolution in MyelomaP01CA155258 · NCI · DANA-FARBER CANCER INST · PI Jill Corre · 2011 to 2026
$32.5M
Transcriptional regulation in mammalian cellsR35GM144283 · NIGMS · WHITEHEAD INSTITUTE FOR BIOMEDICAL RES · PI RICHARD YOUNG · 2022 to 2026
$4.0M
Zeiss LSM 980 with Airyscan 2 confocal microscope systemS10OD028520 · OD · WHITEHEAD INSTITUTE FOR BIOMEDICAL RES · PI CHEESEMAN, IAIN MCPHERSON · 2021 to 2021
$600k
Damon Runyon Cancer Research Foundation (Cancer Research Fund of the Damon Runyon-Walter Winchell Foundation) 2458-22National Science Foundation (NSF) 1745302National Science Foundation (NSF) PHY2044895NCI NIH HHS P01 CA155258NIGMS NIH HHS R35 GM144283NIH HHS S10 OD028520U.S. Department of Health & Human Services | NIH | Office of Extramural Research, National Institutes of Health (OER) CA155258U.S. Department of Health & Human Services | NIH | Office of Extramural Research, National Institutes of Health (OER) GM144283
6 · The paper itself

Abstract

Diverse mechanisms have been described for selective enrichment of biomolecules in membrane-bound organelles, but less is known about mechanisms by which molecules are selectively incorporated into biomolecular assemblies such as condensates that lack surrounding membranes. The chemical environments within condensates may differ from those outside these bodies, and if these differed among various types of condensate, then the different solvation environments would provide a mechanism for selective distribution among these intracellular bodies. Here we use small molecule probes to show that different condensates have distinct chemical solvating properties and that selective partitioning of probes in condensates can be predicted with deep learning approaches. Our results demonstrate that different condensates harbor distinct chemical environments that influence the distribution of molecules, show that clues to condensate chemical grammar can be ascertained by machine learning and suggest approaches to facilitate development of small molecule therapeutics with optimal subcellular distribution and therapeutic benefit.

Indexed as

Biomolecular CondensatesMachine Learning

Identifiers

PMID37770698
PMCPMC12181805

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.