Evidence map›Paper›PMID 37770135›Full record

ArticleMutation research. Genetic toxicology and environmental mutagenesis2023

Adopting duplex sequencing technology for genetic toxicity testing: A proof-of-concept mutagenesis experiment with N-ethyl-N-nitrosourea (ENU)-exposed rats.

Stephanie L Smith-Roe, Cheryl A Hobbs, Victoria Hull, J Todd Auman, Leslie Recio, Michael A Streicker, Miriam V Rivas, Gabriel A Pratt, Fang Yin Lo, Jacob E Higgins and 6 more

Open access · hybridAbstract read
In one paragraph

Article in Mutation research. Genetic toxicology and environmental mutagenesis, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 16 citations in OpenAlex.

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  12. Dose-Related Mutagenic and Clastogenic Effects of Benzo[Environmental science & technology · 2024
    Article
  13. Frequencies and spectra of aflatoxin BNAR molecular medicine · 2024
    Article
  14. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

16 authors at 1 institution in 1 country.

Stephanie L Smith-RoeDivision of Translational Toxicology, NIEHS, Research Triangle Park, NC, USA. Electronic address: stephanie.smith-roe@nih.gov.
Cheryl A HobbsIntegrated Laboratory Systems, LLC (An Inotiv Company), Research Triangle Park, NC, USA.
Victoria HullIntegrated Laboratory Systems, LLC (An Inotiv Company), Research Triangle Park, NC, USA.
J Todd AumanIntegrated Laboratory Systems, LLC (An Inotiv Company), Research Triangle Park, NC, USA.
Leslie RecioIntegrated Laboratory Systems, LLC (An Inotiv Company), Research Triangle Park, NC, USA.
Michael A StreickerIntegrated Laboratory Systems, LLC (An Inotiv Company), Research Triangle Park, NC, USA.
Miriam V RivasIntegrated Laboratory Systems, LLC (An Inotiv Company), Research Triangle Park, NC, USA.
Gabriel A PrattTwinStrand Biosciences, Inc., Seattle, WA, USA.
Fang Yin LoTwinStrand Biosciences, Inc., Seattle, WA, USA.
Jacob E HigginsTwinStrand Biosciences, Inc., Seattle, WA, USA.
Elizabeth K SchmidtTwinStrand Biosciences, Inc., Seattle, WA, USA.
Lindsey N WilliamsTwinStrand Biosciences, Inc., Seattle, WA, USA.
Daniela NachmansonTwinStrand Biosciences, Inc., Seattle, WA, USA.
Charles C Valentine IiiTwinStrand Biosciences, Inc., Seattle, WA, USA.
Jesse J SalkTwinStrand Biosciences, Inc., Seattle, WA, USA.
Kristine L WittDivision of Translational Toxicology, NIEHS, Research Triangle Park, NC, USA.
National Institute of Environmental Health Sciences · US

Funding

Novel Tools and Approaches Research ProgramZIAES103378 · NIEHS · NATIONAL INSTITUTE OF ENVIRONMENTAL HEALTH SCIENCES · PI CRIZER, DAVID · 2022 to 2025
$11.2M
Development of a Genotoxicity Assay using Duplex SequencingR44ES030642 · NIEHS · TWINSTRAND BIOSCIENCES, INC. · PI SALK, JESSE J · 2019 to 2021
$1.7M
Intramural NIH HHS Z99 ES999999Intramural NIH HHS ZIA ES103378NIEHS NIH HHS HHSN273201300009CNIEHS NIH HHS R44 ES030642
6 · The paper itself

Abstract

Duplex sequencing (DS) is an error-corrected next-generation sequencing method in which molecular barcodes informatically link PCR-copies back to their source DNA strands, enabling computational removal of errors in consensus sequences. The resulting background of less than one artifactual mutation per 10

Indexed as

EthylnitrosoureaNitrosourea CompoundsAnimalsMaleMutagenesisMutagensMutationRatsRats, Sprague-DawleyReproducibility of ResultsEthylnitrosoureaMutagensNitrosourea CompoundsDuplexSeq™EcNGSError-corrected NGSPig-a gene mutation assayRat-50 mutagenesis assayTransgenic rodent assay

Identifiers

PMID37770135
PMCPMC10539650
OpenAlexW4385481328

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.