Evidence map›Paper›PMID 37769257›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2023

Circadian ribosome profiling reveals a role for the

Arthur Millius, Rikuhiro G Yamada, Hiroshi Fujishima, Kazuhiko Maeda, Daron M Standley, Kenta Sumiyama, Dimitri Perrin, Hiroki R Ueda

Open access · hybridAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.8field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Circadian ribosome profiling reveals a role for theProceedings of the National Academy of Sciences of the United States of America · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 2 countries.

Arthur MilliusLaboratory for Synthetic Biology, RIKEN Quantitative Biology Center, Suita, Osaka 565-0871, Japan.ORCID 0000-0002-5280-6730
Rikuhiro G YamadaLaboratory for Synthetic Biology, RIKEN Quantitative Biology Center, Suita, Osaka 565-0871, Japan.
Hiroshi FujishimaLaboratory for Synthetic Biology, RIKEN Quantitative Biology Center, Suita, Osaka 565-0871, Japan.
Kazuhiko MaedaLaboratory for Host Defense, Immunology Frontier Research Center, Suita, Osaka 565-0871, Japan.ORCID 0000-0003-0305-8163
Daron M StandleyLaboratory for Systems Immunology, Immunology Frontier Research Center, Suita, Osaka 565-0871, Japan.ORCID 0000-0003-4078-0817
Kenta SumiyamaLaboratory of Animal Genetics and Breeding, Graduate School of Bioagricultural Sciences, Nagoya University, Nagoya 464-8601, Japan.ORCID 0000-0001-8785-5439
Dimitri PerrinSchool of Computer Science, Queensland University of Technology, Brisbane QLD 4000, Australia.ORCID 0000-0002-4007-5256
Hiroki R UedaLaboratory for Synthetic Biology, RIKEN Quantitative Biology Center, Suita, Osaka 565-0871, Japan.ORCID 0000-0001-8342-9176
Nagoya University · JPQueensland University of Technology · AUThe University of Osaka · JPThe University of Tokyo · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Many mammalian proteins have circadian cycles of production and degradation, and many of these rhythms are altered posttranscriptionally. We used ribosome profiling to examine posttranscriptional control of circadian rhythms by quantifying RNA translation in the liver over a 24-h period from circadian-entrained mice transferred to constant darkness conditions and by comparing ribosome binding levels to protein levels for 16 circadian proteins. We observed large differences in ribosome binding levels compared to protein levels, and we observed delays between peak ribosome binding and peak protein abundance. We found extensive binding of ribosomes to upstream open reading frames (uORFs) in circadian mRNAs, including the core clock gene

Indexed as

Circadian RhythmRibosome ProfilingSleepAnimalsLuciferasesMiceOpen Reading FramesPeriod Circadian ProteinsRNA, MessengerLuciferasesPer2 protein, mousePeriod Circadian ProteinsRNA, Messengercircadian rhythmsmass spectrometryribosome profilingRNAuORF

Identifiers

PMID37769257
PMCPMC10556633
OpenAlexW4387126645

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.