Evidence map›Paper›PMID 37768852›Full record

ArticleChembiochem : a European journal of chemical biology2023

Amino Acid Residues Controlling Domain Interaction and Interdomain Electron Transfer in Cellobiose Dehydrogenase.

Bettina Motycka, Florian Csarman, Melanie Rupp, Karoline Schnabel, Gabor Nagy, Kwankao Karnpakdee, Stefan Scheiblbrandner, Rupert Tscheliessnig, Chris Oostenbrink, Michal Hammel and 1 more

Open access · hybridAbstract read
In one paragraph

Article in Chembiochem : a European journal of chemical biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
2.0field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 5 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 2 countries.

Bettina MotyckaUniversity of Natural Resources and Life Sciences, Vienna, Department of Food Science and Technology, Institute of Food Technology, Muthgasse 18, 1190, Vienna, Austria.ORCID 0000-0002-8857-453X
Florian CsarmanUniversity of Natural Resources and Life Sciences, Vienna, Department of Food Science and Technology, Institute of Food Technology, Muthgasse 18, 1190, Vienna, Austria.ORCID 0000-0001-6510-9689
Melanie RuppUniversity of Natural Resources and Life Sciences, Vienna, Department of Food Science and Technology, Institute of Food Technology, Muthgasse 18, 1190, Vienna, Austria.ORCID 0000-0001-5154-1905
Karoline SchnabelUniversity of Natural Resources and Life Sciences, Vienna, Department of Food Science and Technology, Institute of Food Technology, Muthgasse 18, 1190, Vienna, Austria.
Gabor NagyMax Planck Institut für Multidisciplinary Sciences, Department of Theoretical and Computational Biophysics, Am Fassberg 11, 37077, Göttingen, Germany.ORCID 0000-0002-8607-9682
Kwankao KarnpakdeeUniversity of Natural Resources and Life Sciences, Vienna, Department of Food Science and Technology, Institute of Food Technology, Muthgasse 18, 1190, Vienna, Austria.ORCID 0000-0002-0380-8473
Stefan ScheiblbrandnerUniversity of Natural Resources and Life Sciences, Vienna, Department of Food Science and Technology, Institute of Food Technology, Muthgasse 18, 1190, Vienna, Austria.ORCID 0000-0002-9858-1637
Rupert TscheliessnigUniversity of Natural Resources and Life Sciences, Vienna, Department of Biotechnology, Institute of Bioprocess Science and Engineering, Muthgasse 18, 1190, Vienna, Austria.ORCID 0000-0001-9480-6846
Chris OostenbrinkUniversity of Natural Resources and Life Sciences, Vienna, Department of Material Sciences and Process Engineering, Institute of Molecular Modeling and Simulation, Muthgasse 18, 1190, Vienna, Austria.ORCID 0000-0002-4232-2556
Michal HammelMolecular Biophysics and Integrated Bioimaging, Lawrence Berkeley National Laboratory, Cyclotron road 1, 94720, Berkeley, California, USA.ORCID 0000-0002-5610-9289
Roland LudwigUniversity of Natural Resources and Life Sciences, Vienna, Department of Food Science and Technology, Institute of Food Technology, Muthgasse 18, 1190, Vienna, Austria.ORCID 0000-0002-5058-5874
BOKU University · ATLawrence Berkeley National Laboratory · USMax Planck Institute for Multidisciplinary SciencesMedical University of Graz · AT

Funding

Transcription-Coupled & Replication-Associated Excision RepairP01CA092584 · NCI · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI WALTER J. CHAZIN · 2001 to 2026
$89.6M
User Training and OutreachP30GM124169 · NIGMS · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI PAUL David ADAMS, Gregory L Hura · 2017 to 2026
$28.6M
NCI NIH HHS P01 CA092584NIGMS NIH HHS P30 GM124169NIGMS NIH HHS P30GM124169-01
6 · The paper itself

Abstract

The function of cellobiose dehydrogenase (CDH) in biosensors, biofuel cells, and as a physiological redox partner of lytic polysaccharide monooxygenase (LPMO) is based on its role as an electron donor. Before donating electrons to LPMO or electrodes, an interdomain electron transfer from the catalytic FAD-containing dehydrogenase domain to the electron shuttling cytochrome domain of CDH is required. This study investigates the role of two crucial amino acids located at the dehydrogenase domain on domain interaction and interdomain electron transfer by structure-based engineering. The electron transfer kinetics of wild-type Myriococcum thermophilum CDH and its variants M309A, R698S, and M309A/R698S were analyzed by stopped-flow spectrophotometry and structural effects were studied by small-angle X-ray scattering. The data show that R698 is essential to pull the cytochrome domain close to the dehydrogenase domain and orient the heme propionate group towards the FAD, while M309 is an integral part of the electron transfer pathway - its mutation reducing the interdomain electron transfer 10-fold. Structural models and molecular dynamics simulations pinpoint the action of these two residues on the domain interaction and interdomain electron transfer.

Indexed as

Carbohydrate DehydrogenasesElectronsAmino AcidsCytochromesElectron TransportFungal ProteinsMixed Function OxygenasesPolysaccharidesAmino AcidsCarbohydrate Dehydrogenasescellobiose-quinone oxidoreductaseCytochromesFungal ProteinsMixed Function OxygenasesPolysaccharidescellobiose dehydrogenaseelectron transfermolecular dynamic simulationmultistate modelingsmall angle X-ray scattering

Identifiers

PMID37768852
PMCPMC10726044
OpenAlexW4387141475

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.