Evidence map›Paper›PMID 37768083›Full record

ArticleJournal of virology2023

The REEP5/TRAM1 complex binds SARS-CoV-2 NSP3 and promotes virus replication.

Jie Li, Qi Gui, Feng-Xia Liang, Joseph Sall, Qingyue Zhang, Yatong Duan, Avantika Dhabaria, Manor Askenazi, Beatrix Ueberheide, Kenneth A Stapleford and 1 more

Open access · hybridAbstract read
In one paragraph

Article in Journal of virology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 8 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

Jie Li *Department of Biochemistry and Molecular Pharmacology, New York University Grossman School of Medicine , New York, New York, USA.ORCID 0000-0003-2400-9790
Qi Gui *Department of Biochemistry and Molecular Pharmacology, New York University Grossman School of Medicine , New York, New York, USA.
Feng-Xia LiangLaura and Isaac Perlmutter NYU Cancer Center, New York University Grossman School of Medicine , New York, New York, USA.
Joseph SallLaura and Isaac Perlmutter NYU Cancer Center, New York University Grossman School of Medicine , New York, New York, USA.
Qingyue ZhangDepartment of Biochemistry and Molecular Pharmacology, New York University Grossman School of Medicine , New York, New York, USA.
Yatong DuanDepartment of Biochemistry and Molecular Pharmacology, New York University Grossman School of Medicine , New York, New York, USA.
Avantika DhabariaProteomics Laboratory, Division of Advanced Research Technologies, New York University Grossman School of Medicine , New York, New York, USA.
Manor AskenaziDepartment of Biochemistry and Molecular Pharmacology, New York University Grossman School of Medicine , New York, New York, USA.
Beatrix UeberheideDepartment of Biochemistry and Molecular Pharmacology, New York University Grossman School of Medicine , New York, New York, USA.
Kenneth A StaplefordDepartment of Microbiology, New York University Grossman School of Medicine , New York, New York, USA.ORCID 0000-0002-7796-2254
Michele PaganoDepartment of Biochemistry and Molecular Pharmacology, New York University Grossman School of Medicine , New York, New York, USA.ORCID 0000-0003-3210-2442
New York University · USHoward Hughes Medical Institute · USJohn L. Miller Great Neck North High School · US

Funding

Vaccine FacilityP30CA016087 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI MARK Reid PHILIPS · 1985 to 2026
$83.1M
Mechanisms of alphavirus infectivity and adaptation - Resubmission - 1R01AI162774 · NIAID · STATE UNIVERSITY NEW YORK STONY BROOK · PI Kenneth Stapleford · 2022 to 2026
$2.7M
Regulation of the cell proliferation by CRL ubiquitin ligases-diversity supplementR35GM136250 · NIGMS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI MICHELE PAGANO · 2020 to 2026
$2.7M
Acquisition of an Orbitrap Elite Mass Spectrometer with ETDS10OD010582 · OD · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI UEBERHEIDE, BEATRIX MAGDALENA · 2013 to 2013
$600k
NCI NIH HHS P30 CA016087NIAID NIH HHS R01 AI162774NIGMS NIH HHS R35 GM136250NIH HHS S10 OD010582
6 · The paper itself

Abstract

importanceGeneration of virus-host protein-protein interactions (PPIs) maps may provide clues to uncover SARS-CoV-2-hijacked cellular processes. However, these PPIs maps were created by expressing each viral protein singularly, which does not reflect the life situation in which certain viral proteins synergistically interact with host proteins. Our results reveal the host-viral protein-protein interactome of SARS-CoV-2 NSP3, NSP4, and NSP6 expressed individually or in combination. Furthermore, REEP5/TRAM1 complex interacts with NSP3 at ROs and promotes viral replication. The significance of our research is identifying virus-host interactions that may be targeted for therapeutic intervention.

Indexed as

Coronavirus Papain-Like ProteasesHost Microbial InteractionsMembrane GlycoproteinsMembrane ProteinsMembrane Transport ProteinsSARS-CoV-2Virus ReplicationCOVID-19HumansProtein BindingProtein Interaction MapsViral Nonstructural ProteinsCoronavirus Papain-Like ProteasesMembrane GlycoproteinsMembrane ProteinsMembrane Transport ProteinsORF1ab polyprotein, SARS-CoV-2papain-like protease, SARS-CoV-2REEP5 protein, humanTRAM1 protein, humanViral Nonstructural ProteinscoronavirusesER membrane rearrangementsNSP3REEP5replication organelleSARS-CoV-2TRAM1

Identifiers

PMID37768083
PMCPMC10617467
OpenAlexW4387115855

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.