Evidence map›Paper›PMID 37766354›Full record

ArticleViruses2023

Novel RNA-Seq Signatures Post-Methamphetamine and Oxycodone Use in a Model of HIV-Associated Neurocognitive Disorders.

Pranavi Athota, Nghi M Nguyen, Victoria L Schaal, Sankarasubramanian Jagadesan, Chittibabu Guda, Sowmya V Yelamanchili, Gurudutt Pendyala

Open access · goldAbstract read
In one paragraph

Article in Viruses, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.1field-weighted citation impact, top 53% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 1 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Pranavi AthotaDepartment of Anesthesiology, University of Nebraska Medical Center (UNMC), Omaha, NE 68198, USA.ORCID 0000-0002-5583-7428
Nghi M NguyenDepartment of Anesthesiology, University of Nebraska Medical Center (UNMC), Omaha, NE 68198, USA.ORCID 0000-0001-9596-4643
Victoria L SchaalDepartment of Anesthesiology, University of Nebraska Medical Center (UNMC), Omaha, NE 68198, USA.ORCID 0000-0002-2868-389X
Sankarasubramanian JagadesanDepartment of Genetics, Cell Biology, and Anatomy, University of Nebraska Medical Center (UNMC), Omaha, NE 68198, USA.ORCID 0000-0002-9936-6082
Chittibabu GudaDepartment of Genetics, Cell Biology, and Anatomy, University of Nebraska Medical Center (UNMC), Omaha, NE 68198, USA.ORCID 0000-0002-5393-9316
Sowmya V YelamanchiliDepartment of Anesthesiology, University of Nebraska Medical Center (UNMC), Omaha, NE 68198, USA.ORCID 0000-0003-1530-0527
Gurudutt PendyalaDepartment of Anesthesiology, University of Nebraska Medical Center (UNMC), Omaha, NE 68198, USA.ORCID 0000-0002-7226-7367
University of Nebraska Medical Center · USNebraska Medical Center · US

Funding

Extracellular vesicles, meth relapse and sex differencesR01DA046852 · NIDA · UNIVERSITY OF NEBRASKA MEDICAL CENTER · PI BEVINS, RICK A, PENDYALA, GURUDUTT · 2018 to 2022
$2.4M
Therapeutic efficacy of Ibudilast to attenuate inflammation at the synapseR21DA046284 · NIDA · UNIVERSITY OF NEBRASKA MEDICAL CENTER · PI PENDYALA, GURUDUTT · 2019 to 2020
$419k
NIDA NIH HHS DA046284, DA046852NIDA NIH HHS R01 DA046852NIDA NIH HHS R21 DA046284
6 · The paper itself

Abstract

In the 21st century, the effects of HIV-associated neurocognitive disorders (HAND) have been significantly reduced in individuals due to the development of antiretroviral therapies (ARTs). However, the growing epidemic of polysubstance use (PSU) has led to concern for the effects of PSU on HIV-seropositive individuals. To effectively treat individuals affected by HAND, it is critical to understand the biological mechanisms affected by PSU, including the identification of novel markers. To fill this important knowledge gap, we used an in vivo HIV-1 Transgenic (HIV-1 Tg) animal model to investigate the effects of the combined use of chronic methamphetamine (METH) and oxycodone (oxy). A RNA-Seq analysis on the striatum-a brain region that is primarily targeted by both HIV and drugs of abuse-identified key differentially expressed markers post-METH and oxy exposure. Furthermore, ClueGO analysis and Ingenuity Pathway Analysis (IPA) revealed crucial molecular and biological functions associated with ATP-activated adenosine receptors, neuropeptide hormone activity, and the oxytocin signaling pathway to be altered between the different treatment groups. The current study further reveals the harmful effects of chronic PSU and HIV infection that can subsequently impact neurological outcomes in polysubstance users with HAND.

Indexed as

HIV-1HIV InfectionsMethamphetamineAnimalsHumansNeurocognitive DisordersOxycodoneRNA-SeqMethamphetamineOxycodonebioinformaticsHIVmethamphetamineoxycodonepolysubstance useRNA sequencingtransgenic rat

Identifiers

PMID37766354
PMCPMC10534928
OpenAlexW4386860249

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.