Evidence map›Paper›PMID 37766343›Full record

ArticleViruses2023

Real-Time Analysis of SARS-CoV-2-Induced Cytolysis Reveals Distinct Variant-Specific Replication Profiles.

Sarah E Scheuermann, Kelly Goff, Lori A Rowe, Brandon J Beddingfield, Nicholas J Maness

Open access · goldAbstract read
In one paragraph

Article in Viruses, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.4field-weighted citation impact, top 40% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 2 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Sarah E ScheuermannDivision of Microbiology, Tulane National Primate Research Center, Covington, LA 70433, USA.ORCID 0000-0002-9899-997X
Kelly GoffDivision of Microbiology, Tulane National Primate Research Center, Covington, LA 70433, USA.
Lori A RoweDivision of Microbiology, Tulane National Primate Research Center, Covington, LA 70433, USA.ORCID 0000-0003-3744-496X
Brandon J BeddingfieldDivision of Microbiology, Tulane National Primate Research Center, Covington, LA 70433, USA.ORCID 0000-0002-9438-1304
Nicholas J ManessDivision of Microbiology, Tulane National Primate Research Center, Covington, LA 70433, USA.ORCID 0000-0002-9332-7891
Tulane University · US

Funding

Tulane NPRC SPF Sheltered Outdoor Enclosure ExpansionP51OD011104 · OD · TULANE UNIVERSITY OF LOUISIANA · PI L Lee HAMM · 2012 to 2026
$142.4M
T cell modulation of COVID-19 diseaseR21AI161567 · NIAID · TULANE UNIVERSITY OF LOUISIANA · PI MANESS, NICHOLAS JAMES · 2021 to 2022
$686k
NIAID NIH HHS R21 AI161567NIH HHS P51 OD011104
6 · The paper itself

Abstract

The ability of each new SARS-CoV-2 variant to evade host humoral immunity is the focus of intense research. Each variant may also harbor unique replication capabilities relevant for disease and transmission. Here, we demonstrate a new approach to assessing viral replication kinetics using real-time cell analysis (RTCA). Virus-induced cell death is measured in real time as changes in electrical impedance through cell monolayers while images are acquired at defined intervals via an onboard microscope and camera. Using this system, we quantified replication kinetics of five clinically important viral variants: WA1/2020 (ancestral), Delta, and Omicron subvariants BA.1, BA.4, and BA.5. Multiple measures proved useful in variant replication comparisons, including the elapsed time to, and the slope at, the maximum rate of cell death. Important findings include significantly weaker replication kinetics of BA.1 by all measures, while BA.5 harbored replication kinetics at or near ancestral levels, suggesting evolution to regain replicative capacity, and both an altered profile of cell killing and enhanced fusogenicity of the Delta variant. Together, these data show that RTCA is a robust method to assess replicative capacity of any given SARS-CoV-2 variant rapidly and quantitatively, which may be useful in assessment of newly emerging variants.

Indexed as

COVID-19SARS-CoV-2ApoptosisCell DeathHumansreal-time cell analysisSARS-CoV-2 variantsviral replication

Identifiers

PMID37766343
PMCPMC10537736
OpenAlexW4386814629

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.