Evidence map›Paper›PMID 37766272›Full record

ArticleViruses2023

Detection of H5N1 High Pathogenicity Avian Influenza Viruses in Four Raptors and Two Geese in Japan in the Fall of 2022.

Kei Nabeshima, Yoshihiro Takadate, Kosuke Soda, Takahiro Hiono, Norikazu Isoda, Yoshihiro Sakoda, Junki Mine, Kohtaro Miyazawa, Manabu Onuma, Yuko Uchida

Open access · goldAbstract read
In one paragraph

Article in Viruses, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
2.4field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 11 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 1 country.

Kei NabeshimaBiodiversity Division, Ecological Risk Assessment and Control Section, National Institute for Environmental Studies, 16-2 Onogawa, Tsukuba 305-8506, Ibaraki, Japan.
Yoshihiro TakadateEmerging Virus Group, Division of Zoonosis Research, National Institute of Animal Health, 3-1-5 Kannondai, Tsukuba 305-0856, Ibaraki, Japan.ORCID 0009-0000-5132-1988
Kosuke SodaAvian Zoonosis Research Center, Faculty of Agriculture, Tottori University, Tottori 680-8553, Tottori, Japan.
Takahiro HionoLaboratory of Microbiology, Department of Disease Control, Faculty of Veterinary Medicine, Hokkaido University, Sapporo 060-0818, Hokkaido, Japan.ORCID 0000-0001-8897-3592
Norikazu IsodaLaboratory of Microbiology, Department of Disease Control, Faculty of Veterinary Medicine, Hokkaido University, Sapporo 060-0818, Hokkaido, Japan.ORCID 0000-0003-3480-988X
Yoshihiro SakodaLaboratory of Microbiology, Department of Disease Control, Faculty of Veterinary Medicine, Hokkaido University, Sapporo 060-0818, Hokkaido, Japan.ORCID 0000-0001-7021-1688
Junki MineEmerging Virus Group, Division of Zoonosis Research, National Institute of Animal Health, 3-1-5 Kannondai, Tsukuba 305-0856, Ibaraki, Japan.ORCID 0000-0002-1603-8471
Kohtaro MiyazawaEmerging Virus Group, Division of Zoonosis Research, National Institute of Animal Health, 3-1-5 Kannondai, Tsukuba 305-0856, Ibaraki, Japan.ORCID 0000-0002-0318-7275
Manabu OnumaBiodiversity Division, Ecological Risk Assessment and Control Section, National Institute for Environmental Studies, 16-2 Onogawa, Tsukuba 305-8506, Ibaraki, Japan.ORCID 0000-0001-8611-7506
Yuko UchidaEmerging Virus Group, Division of Zoonosis Research, National Institute of Animal Health, 3-1-5 Kannondai, Tsukuba 305-0856, Ibaraki, Japan.ORCID 0000-0002-5833-5917
National Institute of Animal Health · JPHokkaido University · JPNational Institute for Environmental Studies · JPTottori University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In the fall of 2022, high pathogenicity avian influenza viruses (HPAIVs) were detected from raptors and geese in Japan, a month earlier than in past years, indicating a shift in detection patterns. In this study, we conducted a phylogenetic analysis on H5N1 HPAIVs detected from six wild birds during the 2022/2023 season to determine their genetic origins. Our findings revealed that these HPAIVs belong to the G2 group within clade 2.3.4.4b, with all isolates classified into three subgroups: G2b, G2d, and G2c. The genetic background of the G2b virus (a peregrine falcon-derived strain) and G2d viruses (two raptors and two geese-derived strains) were the same as those detected in Japan in the 2021/2022 season. Since no HPAI cases were reported in Japan during the summer of 2022, it is probable that migratory birds reintroduced the G2b and G2d viruses. Conversely, the G2c virus (a raptor-derived strain) was first recognized in Japan in the fall of 2022. This strain might share a common ancestor with HPAIVs from Asia and West Siberia observed in the 2021/2022 season. The early migration of waterfowl to Japan in the fall of 2022 could have facilitated the early invasion of HPAIVs.

Indexed as

Influenza A virusInfluenza A Virus, H5N1 SubtypeInfluenza in BirdsRaptorsAnimalsAnimals, WildGeeseJapanPhylogenySeasonsVirulence2022/2023 seasoneastern buzzardgreater white-fronted gooseH5N1high pathogenicity avian influenza virusJapanperegrine falconphylogenetic analysis

Identifiers

PMID37766272
PMCPMC10537537
OpenAlexW4386378643

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.