Evidence map›Paper›PMID 37764936›Full record

ArticlePathogens (Basel, Switzerland)2023

Phylogenomic Comparison of Seven African Swine Fever Genotype II Outbreak Viruses (1998-2019) Reveals the Likely African Origin of Georgia 2007/1.

Rivalani F Mthombeni, Armanda D Bastos, Antoinette van Schalkwyk, Juanita van Emmenes, Livio Heath

Abstract read
In one paragraph

Article in Pathogens (Basel, Switzerland), 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Rivalani F MthombeniAgricultural Research Council-Onderstepoort Veterinary Institute, Onderstepoort 0110, South Africa.
Armanda D BastosDepartment of Zoology & Entomology, Faculty of Natural and Agricultural Sciences, University of Pretoria, Pretoria 0002, South Africa.ORCID 0000-0002-9223-4204
Antoinette van SchalkwykAgricultural Research Council-Onderstepoort Veterinary Institute, Onderstepoort 0110, South Africa.ORCID 0000-0003-4761-8767
Juanita van EmmenesAgricultural Research Council-Onderstepoort Veterinary Institute, Onderstepoort 0110, South Africa.ORCID 0000-0002-3048-315X
Livio HeathAgricultural Research Council-Onderstepoort Veterinary Institute, Onderstepoort 0110, South Africa.

Funding

United States Department of Agriculture 2019-67015-28981
6 · The paper itself

Abstract

Since the initial report of African swine fever (ASF) in Kenya in 1921, the disease has predominantly been confined to Africa. However, in 2007, an ASF genotype II virus of unknown provenance was introduced to Georgia. This was followed by its rampant spread to 73 countries, and the disease is now a global threat to pig production, with limited effective treatment and vaccine options. Here, we investigate the origin of Georgia 2007/1 through genome sequencing of three viruses from outbreaks that predated the genotype II introduction to the Caucasus, namely Madagascar (MAD/01/1998), Mozambique (MOZ/01/2005), and Mauritius (MAU/01/2007). In addition, genome sequences were generated for viruses from East African countries historically affected by genotype II (Malawi (MAL/04/2011) and Tanzania (TAN/01/2011)) and newly invaded southern African countries (Zimbabwe (ZIM/2015) and South Africa (RSA/08/2019). Phylogenomic analyses revealed that MOZ/01/2005, MAL/04/2011, ZIM/2015 and RSA/08/2019 share a recent common ancestor with Georgia 2007/1 and that none contain the large (~550 bp) deletion in the

Indexed as

African swine fever viruscomplete genome sequencinggenotype IIphylogeneticssingle nucleotide polymorphisms (SNPs)

Identifiers

PMID37764936
PMCPMC10537866

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.