Evidence map›Paper›PMID 37762462›Full record

ArticleInternational journal of molecular sciences2023

Cheminformatics and Machine Learning Approaches to Assess Aquatic Toxicity Profiles of Fullerene Derivatives.

Natalja Fjodorova, Marjana Novič, Katja Venko, Bakhtiyor Rasulev, Melek Türker Saçan, Gulcin Tugcu, Safiye Sağ Erdem, Alla P Toropova, Andrey A Toropov

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 6 institutions in 4 countries.

Natalja FjodorovaLaboratory for Chemoinformatics, Theory Department, National Institute of Chemistry, Hajdrihova 19, 1001 Ljubljana, Slovenia.ORCID 0000-0002-1136-8447
Marjana NovičLaboratory for Chemoinformatics, Theory Department, National Institute of Chemistry, Hajdrihova 19, 1001 Ljubljana, Slovenia.
Katja VenkoLaboratory for Chemoinformatics, Theory Department, National Institute of Chemistry, Hajdrihova 19, 1001 Ljubljana, Slovenia.ORCID 0000-0002-7838-234X
Bakhtiyor RasulevDepartment of Coatings and Polymeric Materials, North Dakota State University, NDSU Dept 2510, P.O. Box 6050, Fargo, ND 58108, USA.ORCID 0000-0002-7845-4884
Melek Türker SaçanEcotoxicology and Chemometrics Lab, Institute of Environmental Sciences, Bogazici University, Hisar Campus, 34342 Istanbul, Turkey.
Gulcin TugcuDepartment of Toxicology, Faculty of Pharmacy, Yeditepe University, Atasehir, 34755 Istanbul, Turkey.ORCID 0000-0002-9750-6563
Safiye Sağ ErdemDepartment of Chemistry, Marmara University, 34722 Istanbul, Turkey.
Alla P ToropovaLaboratory of Environmental Chemistry and Toxicology, Istituto di Ricerche Farmacologiche Mario Negri, Via Mario Negri 2, 20156 Milano, Italy.ORCID 0000-0002-4194-9963
Andrey A ToropovLaboratory of Environmental Chemistry and Toxicology, Istituto di Ricerche Farmacologiche Mario Negri, Via Mario Negri 2, 20156 Milano, Italy.ORCID 0000-0001-6864-6340
National Institute of Chemistry · SIMario Negri Institute for Pharmacological Research · ITBoğaziçi University · TRMarmara University · TRNorth Dakota State University · USYeditepe University · TR

Funding

EC project LIFE-CONCERT EC project LIFE-CONCERT contract (LIFE17 GIE/IT/000461)National Science Foundation under NSF MRI Award OAC-2019077, ND EPSCoR Award #IIA-1355466. National Science Foundation under NSF MRI Award OAC-2019077, ND EPSCoR Award #IIA-1355466.Slovenian Research Agency ARRS Grant Number P1-017TÜBITAK Grant Number 119N567
6 · The paper itself

Abstract

Fullerene derivatives (FDs) are widely used in nanomaterials production, the pharmaceutical industry and biomedicine. In the present study, we focused on the potential toxic effects of FDs on the aquatic environment. First, we analyzed the binding affinity of 169 FDs to 10 human proteins (1D6U, 1E3K, 1GOS, 1GS4, 1H82, 1OG5, 1UOM, 2F9Q, 2J0D, 3ERT) obtained from the Protein Data Bank (PDB) and showing high similarity to proteins from aquatic species. Then, the binding activity of 169 FDs to the enzyme acetylcholinesterase (AChE)-as a known target of toxins in fathead minnows and

Indexed as

AcetylcholinesteraseCheminformaticsDaphniaFullerenesMachine LearningQuantitative Structure-Activity RelationshipAnimalsCholinesterase InhibitorsCyprinidaeHumansWater Pollutants, ChemicalAcetylcholinesteraseCholinesterase InhibitorsFullerenesWater Pollutants, Chemicalaquatic toxicityartificial neural networkbinding affinityCORAL softwarefullerene-based nanomaterialsfullerene derivativesprotein–ligand binding activityToxAlerts

Identifiers

PMID37762462
PMCPMC10531479
OpenAlexW4386814903

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.