Evidence map›Paper›PMID 37762286›Full record

ArticleInternational journal of molecular sciences2023

Expression Analysis Reveals Differentially Expressed Genes in BPH and WBPH Associated with Resistance in Rice RILs Derived from a Cross between RP2068 and TN1.

Rashi Anand, Dhanasekar Divya, Sudeshna Mazumdar-Leighton, Jagadish S Bentur, Suresh Nair

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.6field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
  2. Article
  3. Special Issue "Transcriptomics in the Study of Insect Biology".International journal of molecular sciences · 2024
    Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Rashi AnandPlant-Insect Interaction Group, International Centre for Genetic Engineering and Biotechnology, New Delhi 110067, India.
Dhanasekar DivyaAgri Biotech Foundation, Rajendranagar, Hyderabad 500030, India.
Sudeshna Mazumdar-LeightonPlant Biotic Interaction Lab, Department of Botany, University of Delhi, Delhi 110007, India.ORCID 0000-0002-7869-452X
Jagadish S BenturAgri Biotech Foundation, Rajendranagar, Hyderabad 500030, India.
Suresh NairPlant-Insect Interaction Group, International Centre for Genetic Engineering and Biotechnology, New Delhi 110067, India.ORCID 0000-0003-1881-382X
Agri Biotech Foundation · INUniversity of Delhi · INInternational Centre for Genetic Engineering and Biotechnology · IN

Funding

Department of Biotechnology, Government of India Extra-mural fundingInternational Centre for Genetic Engineering and Biotechnology Core GrantsScience and Engineering Research Board, Department of Science and Technology, Government of India EMR/2016/006773
6 · The paper itself

Abstract

BPH (brown planthopper) and WBPH (white backed planthopper) are significant rice pests that often co-occur as sympatric species and cause substantial yield loss. Despite their genetic similarities, different host-resistance genes confer resistance against these two hoppers. The defense mechanisms in rice against these pests are complex, and the molecular processes regulating their responses remain largely unknown. This study used specific recombinant inbred lines (RILs) derived from a cross between rice varieties RP2068-18-3-5 (BPH- and WBPH-resistant) and TN1 (BPH- and WBPH-susceptible) to investigate the mechanisms of interaction between these planthoppers and their rice hosts. WBPH and BPH were allowed to feed on specific RILs, and RNA-Seq was carried out on WBPH insects. Transcriptome profiling and qRT-PCR results revealed differential expression of genes involved in detoxification, digestion, transportation, cuticle formation, splicing, and RNA processing. A higher expression of sugar transporters was observed in both hoppers feeding on rice with resistance against either hopper. This is the first comparative analysis of gene expressions in these insects fed on genetically similar hosts but with differential resistance to BPH and WBPH. These results complement our earlier findings on the differential gene expression of the same RILs (BPH- or WBPH-infested) utilized in this study. Moreover, identifying insect genes and pathways responsible for countering host defense would augment our understanding of BPH and WBPH interaction with their rice hosts and enable us to develop lasting strategies to control these significant pests.

Indexed as

OryzaGene Expression ProfilingGenes, InsectPolymerase Chain ReactionRNA Processing, Post-Transcriptionalgene expression analysis (GEA)integrated pest management (IPM)next-generation sequencing (NGS)Nilaparvata lugensrecombinant inbred lines (RILs)rice pestsSogatella furciferatranscriptome

Identifiers

PMID37762286
PMCPMC10531025
OpenAlexW4386639058

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.