Evidence map›Paper›PMID 37761928›Full record

ArticleGenes2023

Pathological Features and Genetic Polymorphism Analysis of Tomato Spotted Wilt Virus in Infected Tomato Fruit.

Junheng Lv, Yunrong Mo, Minghua Deng, Junqiang Xu, Bin Xu, Xinyun Li, Jing Li, Caiqian Jiang, Ying Zhou, Ziran Wang and 2 more

Open access · goldAbstract read
In one paragraph

Article in Genes, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.8field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 2 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 1 institution in 1 country.

Junheng LvCollege of Landscape and Horticulture, Yunnan Agricultural University, Kunming 650201, China.
Yunrong MoCollege of Food Science and Technology, Yunnan Agricultural University, Kunming 650201, China.
Minghua DengCollege of Landscape and Horticulture, Yunnan Agricultural University, Kunming 650201, China.
Junqiang XuCollege of Landscape and Horticulture, Yunnan Agricultural University, Kunming 650201, China.
Bin XuCollege of Landscape and Horticulture, Yunnan Agricultural University, Kunming 650201, China.
Xinyun LiCollege of Landscape and Horticulture, Yunnan Agricultural University, Kunming 650201, China.
Jing LiCollege of Landscape and Horticulture, Yunnan Agricultural University, Kunming 650201, China.
Caiqian JiangCollege of Landscape and Horticulture, Yunnan Agricultural University, Kunming 650201, China.
Ying ZhouCollege of Landscape and Horticulture, Yunnan Agricultural University, Kunming 650201, China.
Ziran WangCollege of Landscape and Horticulture, Yunnan Agricultural University, Kunming 650201, China.
Zhengan YangCollege of Landscape and Horticulture, Yunnan Agricultural University, Kunming 650201, China.
Kai ZhaoCollege of Landscape and Horticulture, Yunnan Agricultural University, Kunming 650201, China.ORCID 0000-0002-6576-9027
Yunnan Agricultural University · CN

Funding

Key Project of the Basic Research Program of Yunnan Province 202201AS070309National Natural Science Foundation of China 32160715Research and Integrated Applications of Key Technology in Standardized Production of Facility Vegetables 202102AE090005
6 · The paper itself

Abstract

An in-house tomato inbred line, YNAU335, was planted in a greenhouse in spring from 2014 to 2017, and showed immunity to tomato spotted wilt virus (TSWV). YNAU335 was infected with TSWV in the spring from 2018 to 2020, and disease was observed on the leaves, sepals, and fruits. In 2021 and 2022, YNAU335 was planted in spring in the same greenhouse, which was suspected of being infected with TSWV, and visible disease symptoms were observed on the fruits. Transmission electron microscopy, deep sequencing of small RNAs, and molecular mutation diagnosis were used to analyze the pathological features and genetic polymorphism of TSWV infecting tomato fruit. Typical TSWV virions were observed in the infected fruits, but not leaves from YNAU335 grown between 2021 and 2022, and cross-infection was very rarely observed. The number of mitochondria and chloroplasts increased, but the damage to the mitochondria was greater than that seen in the chloroplasts. Small RNA deep sequencing revealed the presence of multiple viral species in TSWV-infected and non-infected tomato samples grown between 2014-2022. Many virus species, including TSWV, which accounted for the largest proportion, were detected in the TSWV-infected tomato leaves and fruit. However, a variety of viruses other than TSWV were also detected in the non-infected tissues. The amino acids of TSWV nucleocapsid proteins (NPs) and movement proteins (MPs) from diseased fruits of YNAU335 picked in 2021-2022 were found to be very diverse. Compared with previously identified NPs and MPs from TSWV isolates, those found in this study could be divided into three types: non-resistance-breaking, resistance-breaking, and other isolates. The number of positive clones and a comparison with previously identified amino acid mutations suggested that mutation F at AA118 of the MP (GenBank OL310707) is likely the key to breaking the resistance to TSWV, and this mutation developed only in the infected fruit of YNAU335 grown in 2021 and 2022.

Indexed as

FruitPlant DiseasesPolymorphism, GeneticSolanum lycopersicumTospovirusHigh-Throughput Nucleotide SequencingPlant Leavespathological featurespolymorphism analysisresistance breakingtomatotomato spotted wilt virus

Identifiers

PMID37761928
PMCPMC10531454
OpenAlexW4386638681

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.