Evidence map›Paper›PMID 37761908›Full record

ArticleGenes2023

Predicting Patterns of Distant Metastasis in Breast Cancer Patients following Local Regional Therapy Using Machine Learning.

Audrey Shiner, Alex Kiss, Khadijeh Saednia, Katarzyna J Jerzak, Sonal Gandhi, Fang-I Lu, Urban Emmenegger, Lauren Fleshner, Andrew Lagree, Marie Angeli Alera and 9 more

Open access · goldAbstract read
In one paragraph

Article in Genes, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 11 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 4 institutions in 3 countries.

Audrey ShinerDepartment of Radiation Oncology, Sunnybrook Health Sciences Centre, Toronto, ON M4N 3M5, Canada.ORCID 0000-0002-8802-4650
Alex KissInstitute of Clinical Evaluative Sciences, Sunnybrook Health Sciences Centre, Toronto, ON M4N 3M5, Canada.
Khadijeh SaedniaDepartment of Radiation Oncology, Sunnybrook Health Sciences Centre, Toronto, ON M4N 3M5, Canada.
Katarzyna J JerzakDivision of Medical Oncology, Department of Medicine, University of Toronto, Toronto, ON M5S 1A8, Canada.
Sonal GandhiDivision of Medical Oncology, Department of Medicine, University of Toronto, Toronto, ON M5S 1A8, Canada.
Fang-I LuDepartment of Anatomic Pathology, Sunnybrook Health Sciences Centre, Toronto, ON M4N 3M5, Canada.
Urban EmmeneggerDivision of Medical Oncology, Department of Medicine, University of Toronto, Toronto, ON M5S 1A8, Canada.ORCID 0000-0002-3178-1896
Lauren FleshnerDepartment of Radiation Oncology, Sunnybrook Health Sciences Centre, Toronto, ON M4N 3M5, Canada.ORCID 0000-0001-8534-6999
Andrew LagreeBiological Sciences Platform, Sunnybrook Research Institute, Toronto, ON M4N 3M5, Canada.ORCID 0000-0002-4091-5550
Marie Angeli AleraBiological Sciences Platform, Sunnybrook Research Institute, Toronto, ON M4N 3M5, Canada.
Mateusz BieleckiDepartment of Radiation Oncology, Sunnybrook Health Sciences Centre, Toronto, ON M4N 3M5, Canada.
Ethan LawBiological Sciences Platform, Sunnybrook Research Institute, Toronto, ON M4N 3M5, Canada.
Brianna LawBiological Sciences Platform, Sunnybrook Research Institute, Toronto, ON M4N 3M5, Canada.
Dylan KamBiological Sciences Platform, Sunnybrook Research Institute, Toronto, ON M4N 3M5, Canada.
Jonathan KleinDepartment of Radiation Oncology, Albert Einstein College of Medicine, New York, NY 10461, USA.
Christopher J PinardBiological Sciences Platform, Sunnybrook Research Institute, Toronto, ON M4N 3M5, Canada.ORCID 0000-0003-1311-5467
Alex ShenfieldDepartment of Engineering and Mathematics, Sheffield Hallam University, Sheffield S1 1WB, UK.ORCID 0000-0002-2931-8077
Ali Sadeghi-NainiDepartment of Radiation Oncology, Sunnybrook Health Sciences Centre, Toronto, ON M4N 3M5, Canada.
William T TranDepartment of Radiation Oncology, Sunnybrook Health Sciences Centre, Toronto, ON M4N 3M5, Canada.ORCID 0000-0002-0733-7234
Sunnybrook Health Science Centre · CAUniversity of Toronto · CAAlbert Einstein College of Medicine · USSheffield Hallam University · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Up to 30% of breast cancer (BC) patients will develop distant metastases (DM), for which there is no cure. Here, statistical and machine learning (ML) models were developed to estimate the risk of site-specific DM following local-regional therapy. This retrospective study cohort included 175 patients diagnosed with invasive BC who later developed DM. Clinicopathological information was collected for analysis. Outcome variables were the first site of metastasis (brain, bone or visceral) and the time interval (months) to developing DM. Multivariate statistical analysis and ML-based multivariable gradient boosting machines identified factors associated with these outcomes. Machine learning models predicted the site of DM, demonstrating an area under the curve of 0.74, 0.75, and 0.73 for brain, bone and visceral sites, respectively. Overall, most patients (57%) developed bone metastases, with increased odds associated with estrogen receptor (ER) positivity. Human epidermal growth factor receptor-2 (HER2) positivity and non-anthracycline chemotherapy regimens were associated with a decreased risk of bone DM, while brain metastasis was associated with ER-negativity. Furthermore, non-anthracycline chemotherapy alone was a significant predictor of visceral metastasis. Here, clinicopathologic and treatment variables used in ML prediction models predict the first site of metastasis in BC. Further validation may guide focused patient-specific surveillance practices.

Indexed as

Breast NeoplasmsBrainBreastFemaleHumansMachine LearningRetrospective Studiesbreast cancer metastasismachine learningmetastatic patternsprediction models

Identifiers

PMID37761908
PMCPMC10531341
OpenAlexW4386526126

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.