Evidence map›Paper›PMID 37759919›Full record

ReviewBrain sciences2023

Data Mining of Microarray Datasets in Translational Neuroscience.

Lance M O'Connor, Blake A O'Connor, Jialiu Zeng, Chih Hung Lo

Open access · goldAbstract readReview
In one paragraph

Review in Brain sciences, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
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  11. Identification of Molecular Correlations of GSDMD with Pyroptosis inAlzheimer's Disease.Combinatorial chemistry & high throughput screening · 2024
    Article
  12. Review
  13. Integrated Transcriptomic and Machine Learning Analysis IdentifiesInternational journal of general medicine · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 2 countries.

Lance M O'ConnorCollege of Biological Sciences, University of Minnesota, Minneapolis, MN 55455, USA.
Blake A O'ConnorSchool of Pharmacy, University of Wisconsin, Madison, WI 53705, USA.
Jialiu ZengLee Kong Chian School of Medicine, Nanyang Technological University, Singapore 308232, Singapore.ORCID 0000-0001-7802-1432
Chih Hung LoLee Kong Chian School of Medicine, Nanyang Technological University, Singapore 308232, Singapore.ORCID 0000-0003-2717-4484
Nanyang Technological University · SGUniversity of Minnesota · USUniversity of Wisconsin–Madison · US

Funding

Lee Kong Chian School of Medicine, Nanyang Technological University, Singapore Dean's Postdoctoral Fellowship (021207-00001)Momental Foundation, USA Mistletoe Research Fellowship (022522-00001)Nanyang Technological University, Singapore Presidential Postdoctoral Fellowship (021229-00001)
6 · The paper itself

Abstract

Data mining involves the computational analysis of a plethora of publicly available datasets to generate new hypotheses that can be further validated by experiments for the improved understanding of the pathogenesis of neurodegenerative diseases. Although the number of sequencing datasets is on the rise, microarray analysis conducted on diverse biological samples represent a large collection of datasets with multiple web-based programs that enable efficient and convenient data analysis. In this review, we first discuss the selection of biological samples associated with neurological disorders, and the possibility of a combination of datasets, from various types of samples, to conduct an integrated analysis in order to achieve a holistic understanding of the alterations in the examined biological system. We then summarize key approaches and studies that have made use of the data mining of microarray datasets to obtain insights into translational neuroscience applications, including biomarker discovery, therapeutic development, and the elucidation of the pathogenic mechanisms of neurodegenerative diseases. We further discuss the gap to be bridged between microarray and sequencing studies to improve the utilization and combination of different types of datasets, together with experimental validation, for more comprehensive analyses. We conclude by providing future perspectives on integrating multi-omics, to advance precision phenotyping and personalized medicine for neurodegenerative diseases.

Indexed as

biological samplesbiomarker discoverycircular RNA (circRNA)long non-coding RNA (lncRNA)messenger RNA (mRNA)microarray analysismicroRNA (miRNA)multi-omics integrationtherapeutic developmenttranslational neuroscience

Identifiers

PMID37759919
PMCPMC10527016
OpenAlexW4386742155

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.