Evidence map›Paper›PMID 37759517›Full record

ReviewCells2023

Single-Cell Transcriptomics of

Smita Kulkarni, Janice J Endsley, Zhao Lai, Todd Bradley, Riti Sharan

Open access · goldAbstract readReview
In one paragraph

Review in Cells, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.4field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 7 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 4 institutions in 1 country.

Smita KulkarniTexas Biomedical Research Institute, San Antonio, TX 78227, USA.
Janice J EndsleyDepartments of Microbiology & Immunology and Pathology, The University of Texas Medical Branch, Galveston, TX 77555, USA.
Zhao LaiGreehey Children's Cancer Research Institute, The University of Texas Health San Antonio, San Antonio, TX 78229, USA.
Todd BradleyGenomic Medicine Center, Children's Mercy Research Institute, Children's Mercy Kansas City, Kansas City, MO 64108, USA.
Riti SharanTexas Biomedical Research Institute, San Antonio, TX 78227, USA.
Texas Biomedical Research Institute · USMercy Research · USThe University of Texas Health Science Center at San Antonio · USThe University of Texas Medical Branch at Galveston · US

Funding

Texas Developmental Center for AIDS ResearchP30AI161943 · NIAID · BAYLOR COLLEGE OF MEDICINE · PI GIORDANO, THOMAS P · 2021 to 2025
$8.3M
Natural killer cell regulation of the germinal center HIV neutralizing antibody responseR01AI147778 · NIAID · CHILDREN'S MERCY HOSP (KANSAS CITY, MO) · PI BRADLEY, TODD CHRISTOPHER · 2020 to 2024
$3.6M
Role of cellular long non-coding RNAs in HIV replication and disease outcomeR01AI157850 · NIAID · TEXAS BIOMEDICAL RESEARCH INSTITUTE · PI KULKARNI, SMITA · 2022 to 2025
$2.0M
Single cell trancriptomics to identify LTBI reactivation markers in TB/HIV co-infectionR21AI170148 · NIAID · TEXAS BIOMEDICAL RESEARCH INSTITUTE · PI SHARAN, RITI · 2022 to 2023
$800k
Effect of IL-21 treatment concurrent to ART and 3HP in Mtb/SIV co-infectionR56AI184089 · NIAID · TEXAS BIOMEDICAL RESEARCH INSTITUTE · PI SHARAN, RITI · 2024 to 2024
$719k
Characterizing IL-22 driven chronic immune activation in HIV/TB co-pandemicK01OD031898 · OD · TEXAS BIOMEDICAL RESEARCH INSTITUTE · PI SHARAN, RITI · 2021 to 2023
$567k
NIAID NIH HHS P30 AI161943NIAID NIH HHS R01 AI147778NIAID NIH HHS R01 AI157850NIAID NIH HHS R21 AI170148NIAID NIH HHS R56 AI184089NIH HHS K01 OD031898
6 · The paper itself

Abstract

Tuberculosis (TB) and Human Immunodeficiency Virus (HIV) co-infection continues to pose a significant healthcare burden. HIV co-infection during TB predisposes the host to the reactivation of latent TB infection (LTBI), worsening disease conditions and mortality. There is a lack of biomarkers of LTBI reactivation and/or immune-related transcriptional signatures to distinguish active TB from LTBI and predict TB reactivation upon HIV co-infection. Characterizing individual cells using next-generation sequencing-based technologies has facilitated novel biological discoveries about infectious diseases, including TB and HIV pathogenesis. Compared to the more conventional sequencing techniques that provide a bulk assessment, single-cell RNA sequencing (scRNA-seq) can reveal complex and new cell types and identify more high-resolution cellular heterogeneity. This review will summarize the progress made in defining the immune atlas of TB and HIV infections using scRNA-seq, including host-pathogen interactions, heterogeneity in HIV pathogenesis, and the animal models employed to model disease. This review will also address the tools needed to bridge the gap between disease outcomes in single infection vs. co-infection. Finally, it will elaborate on the translational benefits of single-cell sequencing in TB/HIV diagnosis in humans.

Indexed as

CoinfectionHIV InfectionsAnimalsGene Expression ProfilingHigh-Throughput Nucleotide SequencingHumansTranscriptomebiomarkerslatent TB infectionsingle cell analysisTB/HIV co-infection

Identifiers

PMID37759517
PMCPMC10529032
OpenAlexW4386814772

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.