Evidence map›Paper›PMID 37758830›Full record

ArticleScientific reports2023

Yeast cell detection using fuzzy automatic contrast enhancement (FACE) and you only look once (YOLO).

Zheng-Jie Huang, Brijesh Patel, Wei-Hao Lu, Tz-Yu Yang, Wei-Cheng Tung, Vytautas Bučinskas, Modris Greitans, Yu-Wei Wu, Po Ting Lin

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Article in Scientific reports, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Zheng-Jie HuangDepartment of Mechanical Engineering, National Taiwan University of Science and Technology, Taipei, 10607, Taiwan.
Brijesh PatelDepartment of Mechanical Engineering, National Taiwan University of Science and Technology, Taipei, 10607, Taiwan.
Wei-Hao LuDepartment of Mechanical Engineering, National Taiwan University of Science and Technology, Taipei, 10607, Taiwan.
Tz-Yu YangDepartment of Mechanical Engineering, National Taiwan University of Science and Technology, Taipei, 10607, Taiwan.
Wei-Cheng TungDepartment of Mechanical Engineering, National Taiwan University of Science and Technology, Taipei, 10607, Taiwan.
Vytautas BučinskasVilnius Gediminas Technical University, 10223, Vilnius, Lithuania.
Modris GreitansInstitute of Electronics and Computer Science, Riga, 1006, Latvia.
Yu-Wei WuGraduate Institute of Biomedical Informatics, College of Medical Science and Technology, Taipei Medical University, Taipei, 11031, Taiwan. yuwei.wu@tmu.edu.tw.
Po Ting LinDepartment of Mechanical Engineering, National Taiwan University of Science and Technology, Taipei, 10607, Taiwan. potinglin@mail.ntust.edu.tw.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In contemporary biomedical research, the accurate automatic detection of cells within intricate microscopic imagery stands as a cornerstone for scientific advancement. Leveraging state-of-the-art deep learning techniques, this study introduces a novel amalgamation of Fuzzy Automatic Contrast Enhancement (FACE) and the You Only Look Once (YOLO) framework to address this critical challenge of automatic cell detection. Yeast cells, representing a vital component of the fungi family, hold profound significance in elucidating the intricacies of eukaryotic cells and human biology. The proposed methodology introduces a paradigm shift in cell detection by optimizing image contrast through optimal fuzzy clustering within the FACE approach. This advancement mitigates the shortcomings of conventional contrast enhancement techniques, minimizing artifacts and suboptimal outcomes. Further enhancing contrast, a universal contrast enhancement variable is ingeniously introduced, enriching image clarity with automatic precision. Experimental validation encompasses a diverse range of yeast cell images subjected to rigorous quantitative assessment via Root-Mean-Square Contrast and Root-Mean-Square Deviation (RMSD). Comparative analyses against conventional enhancement methods showcase the superior performance of the FACE-enhanced images. Notably, the integration of the innovative You Only Look Once (YOLOv5) facilitates automatic cell detection within a finely partitioned grid system. This leads to the development of two models-one operating on pristine raw images, the other harnessing the enriched landscape of FACE-enhanced imagery. Strikingly, the FACE enhancement achieves exceptional accuracy in automatic yeast cell detection by YOLOv5 across both raw and enhanced images. Comprehensive performance evaluations encompassing tenfold accuracy assessments and confidence scoring substantiate the robustness of the FACE-YOLO model. Notably, the integration of FACE-enhanced images serves as a catalyst, significantly elevating the performance of YOLOv5 detection. Complementing these efforts, OpenCV lends computational acumen to delineate precise yeast cell contours and coordinates, augmenting the precision of cell detection.

Indexed as

Biomedical ResearchYeast, DriedArtifactsCluster AnalysisHumansSaccharomyces cerevisiae

Identifiers

PMID37758830
PMCPMC10533879

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.