Evidence map›Paper›PMID 37756607›Full record

ArticleJournal of cell science2023

Transcription inhibition suppresses nuclear blebbing and rupture independently of nuclear rigidity.

Isabel K Berg, Marilena L Currey, Sarthak Gupta, Yasmin Berrada, Bao V Nguyen, Mai Pho, Alison E Patteson, J M Schwarz, Edward J Banigan, Andrew D Stephens

Open access · bronzeAbstract read
In one paragraph

Article in Journal of cell science, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
4.3field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 28 citations in OpenAlex.

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  20. How the chromatin landscape influences nuclear morphology.Frontiers in cell and developmental biology · 2025
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 1 country.

Isabel K BergBiology Department, University of Massachusetts Amherst, Amherst, MA 01003, USA.
Marilena L CurreyBiology Department, University of Massachusetts Amherst, Amherst, MA 01003, USA.
Sarthak GuptaDepartment of Physics and BioInspired Syracuse, Syracuse University, Syracuse, NY 13244, USA.
Yasmin BerradaBiology Department, University of Massachusetts Amherst, Amherst, MA 01003, USA.
Bao V NguyenMolecular and Cellular Biology, University of Massachusetts Amherst, Amherst, MA 01003, USA.
Mai PhoBiology Department, University of Massachusetts Amherst, Amherst, MA 01003, USA.
Alison E PattesonDepartment of Physics and BioInspired Syracuse, Syracuse University, Syracuse, NY 13244, USA.ORCID 0000-0002-4004-1734
J M SchwarzDepartment of Physics and BioInspired Syracuse, Syracuse University, Syracuse, NY 13244, USA.
Edward J BaniganInstitute of Medical Engineering & Science and Department of Physics, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.ORCID 0000-0001-5478-7425
Andrew D StephensBiology Department, University of Massachusetts Amherst, Amherst, MA 01003, USA.ORCID 0000-0001-5474-7845
Amherst College · USSyracuse University · USIndian Creek Farm · USMassachusetts Institute of Technology · US

Funding

Center for 3D Structure and Physics of the GenomeUM1HG011536 · NHGRI · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI DEKKER, JOB, MIRNY, LEONID A · 2020 to 2024
$11.8M
Role of vimentin in mammalian cell motilityR35GM142963 · NIGMS · SYRACUSE UNIVERSITY · PI PATTESON, ALISON ELISE · 2021 to 2025
$2.1M
Analyzing the role of chromatin compaction in nuclear mechanics, structure, and functionR00GM123195 · NIGMS · UNIVERSITY OF MASSACHUSETTS AMHERST · PI STEPHENS, ANDREW DANIEL · 2020 to 2022
$745k
National Science Foundation DMR-1832002National Science Foundation DMR-2204312NHGRI NIH HHS UM1 HG011536NIGMS NIH HHS R00 GM123195NIGMS NIH HHS R35 GM142963NIH HHS R00GM123195
6 · The paper itself

Abstract

Chromatin plays an essential role in the nuclear mechanical response and determining nuclear shape, which maintain nuclear compartmentalization and function. However, major genomic functions, such as transcription activity, might also impact cell nuclear shape via blebbing and rupture through their effects on chromatin structure and dynamics. To test this idea, we inhibited transcription with several RNA polymerase II inhibitors in wild-type cells and perturbed cells that presented increased nuclear blebbing. Transcription inhibition suppressed nuclear blebbing for several cell types, nuclear perturbations and transcription inhibitors. Furthermore, transcription inhibition suppressed nuclear bleb formation, bleb stabilization and bleb-based nuclear ruptures. Interestingly, transcription inhibition did not alter the histone H3 lysine 9 (H3K9) modification state, nuclear rigidity, and actin compression and contraction, which typically control nuclear blebbing. Polymer simulations suggested that RNA polymerase II motor activity within chromatin could drive chromatin motions that deform the nuclear periphery. Our data provide evidence that transcription inhibition suppresses nuclear blebbing and rupture, in a manner separate and distinct from chromatin rigidity.

Indexed as

ChromatinRNA Polymerase IIActinsCell NucleusTranscription, GeneticActinsChromatinRNA Polymerase IIChromatinMechanobiologyNuclear blebbingNucleus

Identifiers

PMID37756607
PMCPMC10660790
OpenAlexW4387087207

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.