Evidence map›Paper›PMID 37756398›Full record

ArticleScience advances2023

RNA structures and dynamics with Å resolution revealed by x-ray free-electron lasers.

Kara A Zielinski, Shuo Sui, Suzette A Pabit, Daniel A Rivera, Tong Wang, Qingyue Hu, Maithri M Kashipathy, Stella Lisova, Chris B Schaffer, Valerio Mariani and 6 more

Abstract read
In one paragraph

Article in Science advances, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
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  4. Review
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

16 authors.

Kara A ZielinskiSchool of Applied and Engineering Physics, Cornell University, Ithaca, NY 14853, USA.ORCID 0000-0002-9907-5058
Shuo SuiSchool of Applied and Engineering Physics, Cornell University, Ithaca, NY 14853, USA.ORCID 0000-0002-3740-8566
Suzette A PabitSchool of Applied and Engineering Physics, Cornell University, Ithaca, NY 14853, USA.ORCID 0000-0002-2102-2474
Daniel A RiveraMeinig School of Biomedical Engineering, Cornell University, Ithaca, NY 14853, USA.ORCID 0000-0002-4558-7402
Tong WangSchool of Applied and Engineering Physics, Cornell University, Ithaca, NY 14853, USA.ORCID 0000-0002-7569-6386
Qingyue HuSchool of Applied and Engineering Physics, Cornell University, Ithaca, NY 14853, USA.
Maithri M KashipathyLinac Coherent Light Source, SLAC National Accelerator Laboratory, Menlo Park, CA 94025, USA.
Stella LisovaLinac Coherent Light Source, SLAC National Accelerator Laboratory, Menlo Park, CA 94025, USA.
Chris B SchafferMeinig School of Biomedical Engineering, Cornell University, Ithaca, NY 14853, USA.ORCID 0000-0002-7800-9596
Valerio MarianiLinac Coherent Light Source, SLAC National Accelerator Laboratory, Menlo Park, CA 94025, USA.ORCID 0000-0001-7611-5128
Mark S HunterLinac Coherent Light Source, SLAC National Accelerator Laboratory, Menlo Park, CA 94025, USA.
Christopher KupitzLinac Coherent Light Source, SLAC National Accelerator Laboratory, Menlo Park, CA 94025, USA.ORCID 0000-0002-7940-3042
Frank R MossLinac Coherent Light Source, SLAC National Accelerator Laboratory, Menlo Park, CA 94025, USA.ORCID 0000-0002-6149-6447
Frédéric P PoitevinLinac Coherent Light Source, SLAC National Accelerator Laboratory, Menlo Park, CA 94025, USA.ORCID 0000-0002-3181-8652
Thomas D GrantDepartment of Structural Biology, Jacobs School of Medicine and Biological Sciences, University at Buffalo, Buffalo, NY 14203, USA.ORCID 0000-0002-8583-3700
Lois PollackSchool of Applied and Engineering Physics, Cornell University, Ithaca, NY 14853, USA.ORCID 0000-0002-9366-4396

Funding

X-ray Scattering Technology CoreP30GM133893 · NIGMS · BROOKHAVEN SCIENCE ASSOC-BROOKHAVEN LAB · PI Sean McSweeney · 2019 to 2026
$38.6M
Structural Dynamics at LCLSP41GM139687 · NIGMS · STANFORD UNIVERSITY · PI HUNTER, MARK · 2021 to 2025
$7.5M
Nucleic acid interactions with partners: ions and proteinsR35GM122514 · NIGMS · CORNELL UNIVERSITY · PI Lois Pollack · 2017 to 2026
$3.8M
High-resolution molecular recognition of ligands using solution X-ray scatteringR01GM133998 · NIGMS · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI GRANT, THOMAS D. · 2019 to 2022
$1.3M
A Simultaneous SAXS/WAXS Detector System for Solving Biological StructuresS10OD012331 · OD · STATE UNIVERSITY NEW YORK STONY BROOK · PI ALLAIRE, MARC · 2012 to 2012
$1.1M
Lab Source for Small/Wide Angle X-ray Scattering ExperimentsS10OD028617 · OD · CORNELL UNIVERSITY · PI POLLACK, LOIS · 2020 to 2020
$549k
High-Repetition Rate X-ray Detector for the Coherent X-ray Imaging Instrument at LCLSS10OD025079 · OD · STANFORD UNIVERSITY · PI BOUTET, SEBASTIEN · 2018 to 2018
$524k
NIGMS NIH HHS P30 GM133893NIGMS NIH HHS P41 GM139687NIGMS NIH HHS R01 GM133998NIGMS NIH HHS R35 GM122514NIH HHS S10 OD012331NIH HHS S10 OD025079NIH HHS S10 OD028617
6 · The paper itself

Abstract

RNA macromolecules, like proteins, fold to assume shapes that are intimately connected to their broadly recognized biological functions; however, because of their high charge and dynamic nature, RNA structures are far more challenging to determine. We introduce an approach that exploits the high brilliance of x-ray free-electron laser sources to reveal the formation and ready identification of angstrom-scale features in structured and unstructured RNAs. Previously unrecognized structural signatures of RNA secondary and tertiary structures are identified through wide-angle solution scattering experiments. With millisecond time resolution, we observe an RNA fold from a dynamically varying single strand through a base-paired intermediate to assume a triple-helix conformation. While the backbone orchestrates the folding, the final structure is locked in by base stacking. This method may help to rapidly characterize and identify structural elements in nucleic acids in both equilibrium and time-resolved experiments.

Indexed as

Nucleic AcidsRNAElectronsLasersNucleic AcidsRNA

Identifiers

PMID37756398
PMCPMC10530093

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.