Evidence map›Paper›PMID 37755034›Full record

ArticleJournal of fungi (Basel, Switzerland)2023

Oomycete Soil Diversity Associated with

Taavi Riit, Michelle Cleary, Kalev Adamson, Mimmi Blomquist, Daiva Burokienė, Diana Marčiulynienė, Jonàs Oliva, Anna Poimala, Miguel Angel Redondo, Gunn Mari Strømeng and 6 more

Abstract read
In one paragraph

Article in Journal of fungi (Basel, Switzerland), 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Taavi RiitInstitute of Forestry and Engineering, Estonian University of Life Sciences, F. R. Kreutzwaldi 5, 51006 Tartu, Estonia.
Michelle ClearySouthern Swedish Forest Research Centre, Swedish University of Agricultural Sciences, Sundsvägen 3, 230 53 Alnarp, Sweden.ORCID 0000-0002-0318-5974
Kalev AdamsonInstitute of Forestry and Engineering, Estonian University of Life Sciences, F. R. Kreutzwaldi 5, 51006 Tartu, Estonia.ORCID 0000-0002-8810-8838
Mimmi BlomquistSouthern Swedish Forest Research Centre, Swedish University of Agricultural Sciences, Sundsvägen 3, 230 53 Alnarp, Sweden.
Daiva BurokienėNature Research Centre, Akademijos Str. 2, LT-08412 Vilnius, Lithuania.ORCID 0000-0001-5965-5210
Diana MarčiulynienėSouthern Swedish Forest Research Centre, Swedish University of Agricultural Sciences, Sundsvägen 3, 230 53 Alnarp, Sweden.ORCID 0000-0002-0501-6680
Jonàs OlivaDepartment of Agricultural and Forest Sciences and Engineering, University of Lleida, 25198 Lleida, Spain.ORCID 0000-0003-2418-2542
Anna PoimalaNatural Resources Institute Finland (LUKE), Latokartanonkaari 9, 00790 Helsinki, Finland.ORCID 0000-0001-9374-3783
Miguel Angel RedondoDepartment of Forest Mycology and Plant Pathology, Swedish University of Agricultural Sciences, P.O. Box 7026, 750 07 Uppsala, Sweden.ORCID 0000-0002-6383-5457
Gunn Mari StrømengNorwegian Institute of Bioeconomy Research, NIBIO, Høgskoleveien 7, 1433 Ås, Norway.
Venche TalgøNorwegian Institute of Bioeconomy Research, NIBIO, Høgskoleveien 7, 1433 Ås, Norway.
Leho TedersooMycology and Microbiology Center, University of Tartu, J. Liivi 2, 50409 Tartu, Estonia.
Iben Margrete ThomsenDepartment of Geosciences and Natural Resource Management, University of Copenhagen, Rolighedsvej 23, 1958 Frederiksberg C, Denmark.
Anne UimariNatural Resources Institute Finland (LUKE), Juntintie 154, 77600 Suonenjoki, Finland.
Johanna WitzellSouthern Swedish Forest Research Centre, Swedish University of Agricultural Sciences, Sundsvägen 3, 230 53 Alnarp, Sweden.ORCID 0000-0003-1741-443X
Rein DrenkhanInstitute of Forestry and Engineering, Estonian University of Life Sciences, F. R. Kreutzwaldi 5, 51006 Tartu, Estonia.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

This study aimed to determine the differences and drivers of oomycete diversity and community composition in alder- and birch-dominated park and natural forest soils of the Fennoscandian and Baltic countries of Estonia, Finland, Lithuania, Norway, and Sweden. For this, we sequenced libraries of PCR products generated from the DNA of 111 soil samples collected across a climate gradient using oomycete-specific primers on a PacBio high-throughput sequencing platform. We found that oomycete communities are most affected by temperature seasonality, annual mean temperature, and mean temperature of the warmest quarter. Differences in composition were partly explained by the higher diversity of Saprolegniales in Sweden and Norway, as both total oomycete and Saprolegniales richness decreased significantly at higher longitudes, potentially indicating the preference of this group of oomycetes for a more temperate maritime climate. None of the evaluated climatic variables significantly affected the richness of Pythiales or Peronosporales. Interestingly, the relative abundance and richness of Pythiales was higher at urban sites compared to forest sites, whereas the opposite was true for Saprolegniales. Additionally, this is the first report of

Indexed as

metabarcodingoomycete communityPhytophthoraplant pathogensoil communitysoil microbe

Identifiers

PMID37755034
PMCPMC10532727

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.