Evidence map›Paper›PMID 37753713›Full record

ArticleStatistics in medicine2023

Estimating seroconversion rates accounting for repeated infections by approximate Bayesian computation.

Peter F M Teunis, Yuke Wang, Kristen Aiemjoy, Mirjam Kretzschmar, Marc Aerts

Open access · bronzeAbstract read
In one paragraph

Article in Statistics in medicine, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.7field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 3 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 4 institutions in 4 countries.

Peter F M TeunisHubert Department of Global Health, Center for Global Safe WASH, Rollins School of Public Health, Emory University, Atlanta, Georgia, USA.ORCID 0000-0003-1904-6044
Yuke WangHubert Department of Global Health, Center for Global Safe WASH, Rollins School of Public Health, Emory University, Atlanta, Georgia, USA.
Kristen AiemjoyDepartment of Public Health Sciences, Division of Epidemiology, University of California, Davis, California, USA.ORCID 0000-0003-1886-2699
Mirjam KretzschmarJulius Center for Health Sciences and Primary Care, University Medical Center Utrecht, Utrecht University, Utrecht, The Netherlands.
Marc AertsCenter for Statistics (CenStat), University Hasselt, Hasselt, Belgium.
Emory University · USHasselt University · BEMahidol University · THUtrecht University · NL

Funding

Estimating the Seroincidence of Melioidosis, Typhoid Fever and Scrub Typhus from Cross-sectional SerosurveysK01TW012177 · FIC · UNIVERSITY OF CALIFORNIA AT DAVIS · PI Kristen Aiemjoy · 2022 to 2026
$901k
FIC NIH HHS K01 TW012177FIC NIH HHS K01 TW012177-01A1NIAID NIH HHS L30 AI147158
6 · The paper itself

Abstract

This study presents a novel approach for inferring the incidence of infections by employing a quantitative model of the serum antibody response. Current methodologies often overlook the cumulative effect of an individual's infection history, making it challenging to obtain a marginal distribution for antibody concentrations. Our proposed approach leverages approximate Bayesian computation to simulate cross-sectional antibody responses and compare these to observed data, factoring in the impact of repeated infections. We then assess the empirical distribution functions of the simulated and observed antibody data utilizing Kolmogorov deviance, thereby incorporating a goodness-of-fit check. This new method not only matches the computational efficiency of preceding likelihood-based analyses but also facilitates the joint estimation of antibody noise parameters. The results affirm that the predictions generated by our within-host model closely align with the observed distributions from cross-sectional samples of a well-characterized population. Our findings mirror those of likelihood-based methodologies in scenarios of low infection pressure, such as the transmission of pertussis in Europe. However, our simulations reveal that in settings of higher infection pressure, likelihood-based approaches tend to underestimate the force of infection. Thus, our novel methodology presents significant advancements in estimating infection incidence, thereby enhancing our understanding of disease dynamics in the field of epidemiology.

Indexed as

HIV SeropositivityBayes TheoremCross-Sectional StudiesHumansLikelihood FunctionsSeroconversionapproximate Bayesian computationempirical distribution functionreinfectionseroincidence

Identifiers

PMID37753713
PMCPMC10842067
OpenAlexW4387077736

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.