Evidence map›Paper›PMID 37752822›Full record

ArticleOrthopaedic surgery2023

Analysis of Zinc and Stromal Immunity in Disuse Osteoporosis: Mendelian Randomization and Transcriptomic Analysis.

Fei Lyu, Li Wang, Yiming Jia, Yuanlin Wang, Haolan Qi, Zhengxu Dai, Xuyang Zhou, Haoran Zhu, Bing Li, Yujing Xu and 1 more

Open access · goldAbstract read
In one paragraph

Article in Orthopaedic surgery, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed, 1 pooled it
1.1field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 1 synthesis or guideline pooled it, 7 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 6 institutions in 1 country.

Fei LyuCollege of Orthopedics, Tianjin Medical University, Tianjin, China.
Li WangCollege of Orthopedics, Tianjin Medical University, Tianjin, China.
Yiming JiaCollege of Orthopedics, Tianjin Medical University, Tianjin, China.
Yuanlin WangDepartment of Joint Surgery, Tianjin Hospital, Tianjin, China.ORCID https://orcid.org/0009-0008-9433-5712
Haolan QiSchool of Medicine, Nankai University, Tianjin, China.
Zhengxu DaiCollege of Orthopedics, Tianjin Medical University, Tianjin, China.
Xuyang ZhouCollege of Orthopedics, Tianjin Medical University, Tianjin, China.
Haoran ZhuSchool of Medicine, Xi'an Jiaotong University, Xian, China.
Bing LiCollege of Orthopedics, Tianjin Medical University, Tianjin, China.
Yujing XuTianjin Key Laboratory on Technologies Enabling Development of Clinical Therapeutics and Diagnostics, School of Pharmacy, Tianjin Medical University, Tianjin, China.
Jun LiuCollege of Orthopedics, Tianjin Medical University, Tianjin, China.ORCID https://orcid.org/0000-0002-1617-6030
Tianjin Hospital · CNChifeng Municipal Hospital · CNInner Mongolia People's Hospital · CNNankai University · CNTianjin Medical University · CNXi'an Jiaotong University · CN

Funding

The Science and Technology Development Fund of Tianjin Education Commission for Higher Education 2020KJ204
6 · The paper itself

Abstract

objectiveDisuse osteoporosis is known to be primarily caused by a lack of exercise. However, the causal relationships between zinc and immunity and disuse osteoporosis remain unknown. This study investigated these relationships and their potential mechanisms.

methodsThis study was an integrative study combining genome-wide association studies and transcriptomics. Two-sample Mendelian randomization analysis (MR) was used to analyze the causal relationships between exposures (zinc, immunity, physical activity) and the outcome (osteoporosis) with the aid of single-nucleotide polymorphisms (SNPs) as instrumental variables (IVs). Four models, MR-Egger, inverse variance weighted, weighted median and MR-Pleiotrophy RESidual Sum and Outlier (MRPRESSO), were used to calculate odds ratio values. Sensitivity and heterogeneity analyses were also performed using MRPRESSO and MR-Egger methods. The mRNA transcriptomic analysis was subsequently conducted. Zinc metabolism scores were acquired through single-sample Gene Set Enrichment Analysis algorithms. Stromal scores were obtained using the R Package "estimate" algorithms. Important Kyoto Encyclopedia of Genes and Genomes and Gene Ontology pathways were also derived through gene set variation analysis. Cytoscape software helped construct the transcription factor (TF)-mRNA-microRNA (miRNA) network. Virtual screening and molecular docking were performed. Polymerase chain reaction validation was also carried out in vivo.

resultsCausal relationships were demonstrated between zinc and exercise (95% confidence interval [CI] = 1.30-2.95, p = 0.001), exercise and immunity (95% CI = 0.36-0.80, p = 0.002), exercise and osteoporosis (95% CI = 0.97-0.99, p = 0.0007), and immunity disorder and osteoporosis (95% CI = 1.30-2.03, p = 0.00002). One hundred and seventy-nine mRNAs in important modules were screened. Combining the differential expressional genes (DEGs) and the Boruta selection, six DEGs were screened (AHNAK, CSF2, ADAMTS12, SRA1, RUNX2, and SLC39A14). TF HOXC10 and miRNA hsa-miR-204 were predicted. Then, the TF-mRNA-miRNA network was successfully constructed. RUNX2 and SLC39A14 were identified as hub mRNAs in the TF-mRNA-miRNA network. Eventually, the novel small drug C6O4NH5 was designed according to the pharmacophore structure of SLC39A14. The docking energy for the novel drug was -5.83 kcal/mol. SLC39A14 and RUNX2 were downregulated (of statistical significance p-value < 0.05) in our animal experiment.

conclusionThis study revealed that zinc had a protective causal relationship with disuse osteoporosis by promoting exercise and immunity. SLC39A14 and RUNX2 mRNA participated in this zinc-related mechanism.

Indexed as

MicroRNAsOsteoporosisAnimalsCore Binding Factor Alpha 1 SubunitGenome-Wide Association StudyMendelian Randomization AnalysisMolecular Docking SimulationPolymorphism, Single NucleotideRNA, MessengerTranscriptomeZincCore Binding Factor Alpha 1 SubunitMicroRNAsRNA, MessengerZincDisuse OsteoporosisImmunityMendelian RandomizationTranscriptomeVirtual ScreeningZinc

Identifiers

PMID37752822
PMCPMC10622276
OpenAlexW4387077074

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.