Evidence map›Paper›PMID 37751945›Full record

ArticleGenome research2023

An organism-wide ATAC-seq peak catalog for the bovine and its use to identify regulatory variants.

Can Yuan, Lijing Tang, Thomas Lopdell, Vyacheslav A Petrov, Claire Oget-Ebrad, Gabriel Costa Monteiro Moreira, José Luis Gualdrón Duarte, Arnaud Sartelet, Zhangrui Cheng, Mazdak Salavati and 9 more

Abstract read
In one paragraph

Article in Genome research, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. ELF5-Mediated Enhancer-Promoter Interaction Regulates LALBA Expression in Ovine Mammary Gland.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Article
  2. Article
  3. Review
  4. Effect of methylation on genome mutability in cattle.Genetics, selection, evolution : GSE · 2026
    Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Article
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  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors.

Can YuanUnit of Animal Genomics, GIGA-R and Faculty of Veterinary Medicine, University of Liège, 4000 Liège, Belgium.
Lijing TangUnit of Animal Genomics, GIGA-R and Faculty of Veterinary Medicine, University of Liège, 4000 Liège, Belgium.
Thomas LopdellResearch and Development, Livestock Improvement Corporation, Hamilton 3240, New Zealand.ORCID 0000-0002-7684-4870
Vyacheslav A PetrovUnit of Animal Genomics, GIGA-R and Faculty of Veterinary Medicine, University of Liège, 4000 Liège, Belgium.
Claire Oget-EbradUnit of Animal Genomics, GIGA-R and Faculty of Veterinary Medicine, University of Liège, 4000 Liège, Belgium.ORCID 0000-0003-1832-871X
Gabriel Costa Monteiro MoreiraUnit of Animal Genomics, GIGA-R and Faculty of Veterinary Medicine, University of Liège, 4000 Liège, Belgium.
José Luis Gualdrón DuarteUnit of Animal Genomics, GIGA-R and Faculty of Veterinary Medicine, University of Liège, 4000 Liège, Belgium.
Arnaud SarteletClinical Department of Ruminant, University of Liège, 4000 Liège, Belgium.
Zhangrui ChengRoyal Veterinary College, Hatfield, Herts AL9 7TA, United Kingdom.
Mazdak SalavatiRoyal Veterinary College, Hatfield, Herts AL9 7TA, United Kingdom.
D Claire WathesRoyal Veterinary College, Hatfield, Herts AL9 7TA, United Kingdom.
Mark A CroweSchool of Veterinary Medicine, University College Dublin, Dublin 4, Ireland.
GplusE Consortium
Wouter CoppietersGIGA Genomics platform, GIGA Institute, University of Liège, 4000 Liège, Belgium.
Mathew LittlejohnResearch and Development, Livestock Improvement Corporation, Hamilton 3240, New Zealand.
Carole CharlierUnit of Animal Genomics, GIGA-R and Faculty of Veterinary Medicine, University of Liège, 4000 Liège, Belgium.
Tom DruetUnit of Animal Genomics, GIGA-R and Faculty of Veterinary Medicine, University of Liège, 4000 Liège, Belgium.ORCID 0000-0003-1637-1706
Michel GeorgesUnit of Animal Genomics, GIGA-R and Faculty of Veterinary Medicine, University of Liège, 4000 Liège, Belgium; michel.georges@uliege.be.
Haruko TakedaUnit of Animal Genomics, GIGA-R and Faculty of Veterinary Medicine, University of Liège, 4000 Liège, Belgium.ORCID 0000-0002-8455-6887

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We report the generation of an organism-wide catalog of 976,813

Indexed as

Chromatin Immunoprecipitation SequencingHigh-Throughput Nucleotide SequencingAnimalsCattleChromatinRegulatory Sequences, Nucleic AcidSequence Analysis, DNAChromatin

Identifiers

PMID37751945
PMCPMC10691486

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.