Evidence map›Paper›PMID 37751074›Full record

ArticlePhotochemical & photobiological sciences : Official journal of the European Photochemistry Association and the European Society for Photobiology2023

Metabolomic response to high light from pgrl1 and pgr5 mutants of Chlamydomonas reinhardtii.

Nisha Chouhan, Sureshbabu Marriboina, Aprajita Kumari, Pooja Singh, Ranay Mohan Yadav, Kapuganti Jagadis Gupta, Rajagopal Subramanyam

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In one paragraph

Article in Photochemical & photobiological sciences : Official journal of the European Photochemistry Association and the European Society for Photobiology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.6field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 4 citations in OpenAlex.

  1. From Division to Death: Metabolomic Analysis ofPlants (Basel, Switzerland) · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Nisha ChouhanDepartment of Plant Sciences, School of Life Sciences, University of Hyderabad, Hyderabad, 500046, India.
Sureshbabu MarriboinaDepartment of Plant Sciences, School of Life Sciences, University of Hyderabad, Hyderabad, 500046, India.
Aprajita KumariNational Institute for Plant Genome Research, Aruna Asaf Ali Marg, New Delhi, 110067, India.
Pooja SinghNational Institute for Plant Genome Research, Aruna Asaf Ali Marg, New Delhi, 110067, India.
Ranay Mohan YadavDepartment of Plant Sciences, School of Life Sciences, University of Hyderabad, Hyderabad, 500046, India.
Kapuganti Jagadis GuptaNational Institute for Plant Genome Research, Aruna Asaf Ali Marg, New Delhi, 110067, India.
Rajagopal SubramanyamDepartment of Plant Sciences, School of Life Sciences, University of Hyderabad, Hyderabad, 500046, India. srgsl@uohyd.ernet.in.ORCID http://orcid.org/0000-0003-3872-8390
National Institute of Plant Genome Research · INUniversity of Hyderabad · INBen-Gurion University of the Negev · IL

Funding

Department of Biotechnology, Ministry of Science and Technology, India BT/PR14964/BPA/118/137/2015University Grants Commission UoH/IoE/RC1/RC1-20-019
6 · The paper itself

Abstract

Chlamydomonas (C.) reinhardtii metabolomic changes in cyclic electron flow-dependent mutants are still unknown. Here, we used mass spectrometric analysis to monitor the changes in metabolite levels in wild-type, cyclic electron-deficient mutants pgrl1 and pgr5 grown under high-light stress. A total of 55 metabolites were detected using GC-MS analysis. High-light stress-induced selective anaplerotic amino acids in pgr5. In addition, pgr5 showed enhancement in carbohydrate, polyamine, and polyol metabolism by 2.5-fold under high light. In response to high light, pgr5 triggers an increase in several metabolites involved in regulating osmotic pressure. Among these metabolites are glycerol pathway compounds such as glycerol-3-phosphate and glyceryl-glycoside, which increase significantly by 1.55 and 3.07 times, respectively. In addition, pgr5 also enhanced proline and putrescine levels by 2.6- and 1.36-fold under high light. On the other hand, pgrl1-induced metabolites, such as alanine and serine, are crucial for photorespiration when subjected to high-light stress. We also observed a significant increase in levels of polyols and glycerol by 1.37- and 2.97-fold in pgrl1 under high-light stress. Both correlation network studies and KEGG pathway enrichment analysis revealed that metabolites related to several biological pathways, such as amino acid, carbohydrate, TCA cycle, and fatty acid metabolism, were positively correlated in pgrl1 and pgr5 under high-light stress conditions. The relative mRNA expression levels of genes related to the TCA cycle, including PDC3, ACH1, OGD2, OGD3, IDH3, and MDH4, were significantly upregulated in pgrl1 and pgr5 under HL. In pgr5, the MDH1 level was significantly increased, while ACS1, ACS3, IDH2, and IDH3 levels were reduced considerably in pgrl1 under high-light stress. The current study demonstrates both pgr5 and prgl1 showed a differential defense response to high-light stress at the primary metabolites and mRNA expression level, which can be added to the existing knowledge to explore molecular regulatory responses of prg5 and pgrl1 to high-light stress.

Indexed as

Chlamydomonas reinhardtiiPhotosystem I Protein ComplexElectron TransportGlycerolLightPhotosynthesisRNA, MessengerGlycerolPhotosystem I Protein ComplexRNA, MessengerChlamydomonas reinhardtiiCorrelation analysisGene expressionHigh-light stressMetabolomicsNetwork analysisRT-PCR

Identifiers

PMID37751074
OpenAlexW4387033227

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.