Evidence map›Paper›PMID 37749091›Full record

ArticleNature communications2023

C. elegans germ granules sculpt both germline and somatic RNAome.

Ian F Price, Jillian A Wagner, Benjamin Pastore, Hannah L Hertz, Wen Tang

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
2.8field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 31 citations in OpenAlex.

  1. Article
  2. LOTUS-domain proteins activate Vasa to drive germ granule assembly.bioRxiv : the preprint server for biology · 2026
    Article
  3. Article
  4. Review
  5. Kinetochore components are perinuclear and form condensates inbioRxiv : the preprint server for biology · 2025
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Caenorhabditis Elegans as a Model for Environmental Epigenetics.Current environmental health reports · 2025
    Review
  16. Review
  17. Article
  18. Review
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Ian F Price *Department of Biological Chemistry and Pharmacology, The Ohio State University, Columbus, OH, 43210, USA.
Jillian A Wagner *Department of Biological Chemistry and Pharmacology, The Ohio State University, Columbus, OH, 43210, USA.
Benjamin PastoreDepartment of Biological Chemistry and Pharmacology, The Ohio State University, Columbus, OH, 43210, USA.
Hannah L HertzDepartment of Biological Chemistry and Pharmacology, The Ohio State University, Columbus, OH, 43210, USA.
Wen TangDepartment of Biological Chemistry and Pharmacology, The Ohio State University, Columbus, OH, 43210, USA. tang.542@osu.edu.ORCID http://orcid.org/0000-0001-6684-5258
The Ohio State University · US

Funding

Enhancing and expanding the CGC Strain CollectionP40OD010440 · OD · UNIVERSITY OF MINNESOTA · PI Ann E. Rougvie · 2012 to 2026
$7.5M
Heritable macromolecules in C. elegans germ granulesR35GM142580 · NIGMS · OHIO STATE UNIVERSITY · PI TANG, WEN · 2021 to 2025
$2.0M
A spinning disk confocal microscope for live-cell imagingS10OD010383 · OD · OHIO STATE UNIVERSITY · PI BROWN, ANTHONY · 2012 to 2012
$600k
NIGMS NIH HHS R35 GM142580NIH HHS P40 OD010440NIH HHS S10 OD010383
6 · The paper itself

Abstract

Germ granules are membrane-less organelles essential for small RNA biogenesis and germline development. Among the conserved properties of germ granules is their association with the nuclear membrane. Recent studies demonstrated that LOTUS domain proteins, EGGD-1 and EGGD-2 (also known as MIP-1 and MIP-2 respectively), promote the formation of perinuclear germ granules in C. elegans. This finding presents a unique opportunity to evaluate the significance of perinuclear localization of germ granules. Here we show that loss of eggd-1 causes the coalescence of germ granules and formation of abnormal cytoplasmic aggregates. Impairment of perinuclear granules affects certain germline classes of small RNAs including Piwi-interacting RNAs. Transcriptome profiling reveals overexpression of spermatogenic and cuticle-related genes in eggd-1 hermaphrodites. We further demonstrate that disruption of germ granules activates HLH-30-mediated transcriptional program in somatic tissues. Collectively, our findings underscore the essential role of EGGD-1 in germ granule organization and reveal an unexpected germ granule-to-soma communication.

Indexed as

Caenorhabditis elegansCaenorhabditis elegans ProteinsAnimalsBasic Helix-Loop-Helix ProteinsCell BodyCommunicationGerm Cell Ribonucleoprotein GranulesGerm CellsBasic Helix-Loop-Helix ProteinsCaenorhabditis elegans ProteinsHLH-30 protein, C elegans

Identifiers

PMID37749091
PMCPMC10520050
OpenAlexW4387019232

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.