Evidence map›Paper›PMID 37748053›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2023

Trehalose-6-phosphate signaling regulates lateral root formation in Arabidopsis thaliana.

Stefania Morales-Herrera, Joris Jourquin, Frederic Coppé, Lorena Lopez-Galvis, Tom De Smet, Alaeddine Safi, Maria Njo, Cara A Griffiths, John D Sidda, James S O Mccullagh and 6 more

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
17.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 44 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 4 institutions in 2 countries.

Stefania Morales-HerreraDepartment of Plant Biotechnology and Bioinformatics Ghent University, Ghent B-9052, Belgium.ORCID 0000-0001-7643-1358
Joris JourquinDepartment of Plant Biotechnology and Bioinformatics Ghent University, Ghent B-9052, Belgium.ORCID 0000-0003-0808-0730
Frederic CoppéDepartment of Plant Biotechnology and Bioinformatics Ghent University, Ghent B-9052, Belgium.ORCID 0000-0002-7098-3108
Lorena Lopez-GalvisDepartment of Plant Biotechnology and Bioinformatics Ghent University, Ghent B-9052, Belgium.
Tom De SmetDepartment of Organic and Macromolecular Chemistry, Laboratory for Organic and Bio-Organic Synthesis, Ghent University, Ghent B-9000, Belgium.ORCID 0000-0002-0152-7248
Alaeddine SafiDepartment of Plant Biotechnology and Bioinformatics Ghent University, Ghent B-9052, Belgium.ORCID 0000-0003-1532-5708
Maria NjoDepartment of Plant Biotechnology and Bioinformatics Ghent University, Ghent B-9052, Belgium.ORCID 0000-0001-7285-5954
Cara A GriffithsDepartment of Sustainable Soils and Crops, Rothamsted Research, Harpenden AL5 2JQ, United Kingdom.
John D SiddaDepartment of Chemistry, Chemistry Research Laboratory, University of Oxford, Oxford OX1 3TA, United Kingdom.
James S O MccullaghDepartment of Chemistry, Chemistry Research Laboratory, University of Oxford, Oxford OX1 3TA, United Kingdom.ORCID 0000-0003-4733-1205
Xiaochao XueDepartment of Chemistry, Chemistry Research Laboratory, University of Oxford, Oxford OX1 3TA, United Kingdom.
Benjamin G DavisDepartment of Chemistry, Chemistry Research Laboratory, University of Oxford, Oxford OX1 3TA, United Kingdom.ORCID 0000-0002-5056-407X
Johan Van der EyckenDepartment of Organic and Macromolecular Chemistry, Laboratory for Organic and Bio-Organic Synthesis, Ghent University, Ghent B-9000, Belgium.
Matthew J PaulDepartment of Sustainable Soils and Crops, Rothamsted Research, Harpenden AL5 2JQ, United Kingdom.ORCID 0000-0002-2001-961X
Patrick Van DijckLaboratory of Molecular Cell Biology, Katholieke Universiteit Leuven, Leuven B3001, Belgium.ORCID 0000-0002-1542-897X
Tom BeeckmanDepartment of Plant Biotechnology and Bioinformatics Ghent University, Ghent B-9052, Belgium.ORCID 0000-0001-8656-2060
Vlaams Instituut voor Biotechnologie · BEUniversity of Oxford · GBGhent University · BERothamsted Research · GB

Funding

Biotechnology and Biological Sciences Research Council BB/P016855/1
6 · The paper itself

Abstract

Plant roots explore the soil for water and nutrients, thereby determining plant fitness and agricultural yield, as well as determining ground substructure, water levels, and global carbon sequestration. The colonization of the soil requires investment of carbon and energy, but how sugar and energy signaling are integrated with root branching is unknown. Here, we show through combined genetic and chemical modulation of signaling pathways that the sugar small-molecule signal, trehalose-6-phosphate (T6P) regulates root branching through master kinases SNF1-related kinase-1 (SnRK1) and Target of Rapamycin (TOR) and with the involvement of the plant hormone auxin. Increase of T6P levels both via genetic targeting in lateral root (LR) founder cells and through light-activated release of the presignaling T6P-precursor reveals that T6P increases root branching through coordinated inhibition of SnRK1 and activation of TOR. Auxin, the master regulator of LR formation, impacts this T6P function by transcriptionally down-regulating the T6P-degrader trehalose phosphate phosphatase B in LR cells. Our results reveal a regulatory energy-balance network for LR formation that links the 'sugar signal' T6P to both SnRK1 and TOR downstream of auxin.

Indexed as

ArabidopsisArabidopsis ProteinsSugar PhosphatesIndoleacetic AcidsProtein Serine-Threonine KinasesTrehaloseArabidopsis ProteinsAt3g01090 protein, ArabidopsisIndoleacetic AcidsProtein Serine-Threonine KinasesSugar PhosphatesTrehalosetrehalose-6-phosphateenergy-balancelateral root formationSnRK1TORtrehalose-6-phosphate signaling

Identifiers

PMID37748053
PMCPMC10556606
OpenAlexW4387009948

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.