Evidence map›Paper›PMID 37746217›Full record

ReviewFrontiers in fungal biology2022

Ancestral sequence reconstruction as a tool to study the evolution of wood decaying fungi.

Iván Ayuso-Fernández, Gonzalo Molpeceres, Susana Camarero, Francisco Javier Ruiz-Dueñas, Angel T Martínez

Abstract readReview
In one paragraph

Review in Frontiers in fungal biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Iván Ayuso-FernándezFaculty of Chemistry, Biotechnology and Food Science, Norwegian University of Life Sciences (NMBU), Ås, Norway.
Gonzalo MolpeceresCentro de Investigaciones Biológicas "Margarita Salas" (CIB), CSIC, Madrid, Spain.
Susana CamareroCentro de Investigaciones Biológicas "Margarita Salas" (CIB), CSIC, Madrid, Spain.
Francisco Javier Ruiz-DueñasCentro de Investigaciones Biológicas "Margarita Salas" (CIB), CSIC, Madrid, Spain.
Angel T MartínezCentro de Investigaciones Biológicas "Margarita Salas" (CIB), CSIC, Madrid, Spain.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The study of evolution is limited by the techniques available to do so. Aside from the use of the fossil record, molecular phylogenetics can provide a detailed characterization of evolutionary histories using genes, genomes and proteins. However, these tools provide scarce biochemical information of the organisms and systems of interest and are therefore very limited when they come to explain protein evolution. In the past decade, this limitation has been overcome by the development of ancestral sequence reconstruction (ASR) methods. ASR allows the subsequent resurrection in the laboratory of inferred proteins from now extinct organisms, becoming an outstanding tool to study enzyme evolution. Here we review the recent advances in ASR methods and their application to study fungal evolution, with special focus on wood-decay fungi as essential organisms in the global carbon cycling.

Indexed as

ancestral sequence reconstructionevolutionlignocellulosic biomassplant cell-wall degrading enzymes (PCWDE)wood decay fungi

Identifiers

PMID37746217
PMCPMC10512382

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.