Evidence map›Paper›PMID 37745568›Full record

ArticlebioRxiv : the preprint server for biology2023

The diverse evolutionary histories of domesticated metaviral capsid genes in mammals.

William S Henriques, Janet M Young, Artem Nemudryi, Anna Nemudraia, Blake Wiedenheft, Harmit S Malik

Open access · greenAbstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 3 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

William S HenriquesDepartment of Microbiology and Cell Biology, Montana State University, Bozeman MT 59717.
Janet M YoungBasic Sciences Division, Fred Hutchinson Cancer Research Center, Seattle, WA, 98109.
Artem NemudryiDepartment of Microbiology and Cell Biology, Montana State University, Bozeman MT 59717.
Anna NemudraiaDepartment of Microbiology and Cell Biology, Montana State University, Bozeman MT 59717.
Blake WiedenheftDepartment of Microbiology and Cell Biology, Montana State University, Bozeman MT 59717.
Harmit S MalikBasic Sciences Division, Fred Hutchinson Cancer Research Center, Seattle, WA, 98109.
Montana State University · USFred Hutch Cancer Center · USHoward Hughes Medical Institute · US

Funding

Project 3U54AI170792 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI JENNIFER A DOUDNA · 2022 to 2026
$35.7M
ChimeraX -- Next Generation Visualization and Analysis Software for Multiscale ModelingR01GM129325 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI FERRIN, THOMAS E · 2018 to 2025
$5.2M
Structural and functional understanding of bacterial defense and viral counter defenseR35GM134867 · NIGMS · MONTANA STATE UNIVERSITY - BOZEMAN · PI Blake A Wiedenheft · 2020 to 2026
$3.8M
NIAID NIH HHS U54 AI170792NIGMS NIH HHS R01 GM129325NIGMS NIH HHS R35 GM134867
6 · The paper itself

Abstract

Selfish genetic elements and their remnants comprise at least half of the human genome. Active transposons duplicate by inserting copies at new sites in a host genome. Following insertion, transposons can acquire mutations that render them inactive; the accrual of additional mutations can render them unrecognizable over time. However, in rare instances, segments of transposons become useful for the host, in a process called gene domestication. Using the first complete human genome assembly and 25 additional vertebrate genomes, we analyzed the evolutionary trajectories and functional potential of genes domesticated from the capsid genes of

Indexed as

capsidexaptationgene conservationLTR retrotransposonPNMApositive selectionRNA-bindingSIRH

Identifiers

PMID37745568
PMCPMC10516033
OpenAlexW4386810736

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.