Evidence map›Paper›PMID 37745500›Full record

ArticlebioRxiv : the preprint server for biology2024

Notch3 deletion regulates HIV-1 gene expression and systemic inflammation to ameliorate chronic kidney disease.

Mackenzie Thornton, Nicole Sommer, Mercedes McGonigle, Anil Kumar Ram, Sireesha Yerrathota, Henrietta Ehirim, Aakriti Chaturvedi, Johnny Dinh Phan, Anubhav Chakraborty, Praveen V Chakravarthi and 10 more

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In one paragraph

Article in bioRxiv : the preprint server for biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 0 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

20 authors at 6 institutions in 2 countries.

Mackenzie ThorntonDepartment of Internal Medicine, University of Kansas Medical Center, Kansas City, KS.
Nicole SommerDepartment of Internal Medicine, University of Kansas Medical Center, Kansas City, KS.
Mercedes McGonigleDepartment of Internal Medicine, University of Kansas Medical Center, Kansas City, KS.
Anil Kumar RamDepartment of Internal Medicine, University of Kansas Medical Center, Kansas City, KS.
Sireesha YerrathotaDepartment of Internal Medicine, University of Kansas Medical Center, Kansas City, KS.
Henrietta EhirimDepartment of Internal Medicine, University of Kansas Medical Center, Kansas City, KS.
Aakriti ChaturvediDepartment of Internal Medicine, University of Kansas Medical Center, Kansas City, KS.
Johnny Dinh PhanDepartment of Internal Medicine, University of Kansas Medical Center, Kansas City, KS.
Anubhav ChakrabortyDepartment of Internal Medicine, University of Kansas Medical Center, Kansas City, KS.ORCID 0000-0002-7610-4610
Praveen V ChakravarthiDepartment of Pathology and Laboratory Medicine, University of Kansas Medical Center, Kansas City, KS.
Sumedha GunewardenaDepartment of Cell Biology and Physiology, University of Kansas Medical Center, Kansas City, KS.
Mudit TyagiDepartment of Medicine, Center for Translational Medicine, Thomas Jefferson University, Philadelphia, PA.
Jaya TalrejaDivision of Pulmonary, Critical Care and Sleep Medicine, Wayne State University School of Medicine and Detroit Medical Center, Detroit, MI.
Tao WangDepartment of Biology, Medicine and Health, The University of Manchester, UK.
Pravin SinghalInstitute of Molecular Medicine, Feinstein Institute for Medical Research, Zucker School of Medicine at Hofstra-Northwell, New York, NY.
Pamela V TranDepartment of Cell Biology and Physiology, University of Kansas Medical Center, Kansas City, KS.ORCID 0000-0003-4619-4376
Timothy A FieldsDepartment of Pathology and Laboratory Medicine, University of Kansas Medical Center, Kansas City, KS.
Patricio E RayChild Health Research Center and Department of Pediatrics, University of Virginia School of Medicine, Charlottesville, VA.
Navneet K DhillonDepartment of Internal Medicine, University of Kansas Medical Center, Kansas City, KS.
Madhulika SharmaDepartment of Internal Medicine, University of Kansas Medical Center, Kansas City, KS.ORCID 0000-0001-7488-5444
University of Kansas Medical Center · USFeinstein Institute for Medical Research · USManchester Academic Health Science Centre · GBThomas Jefferson University · USUniversity of Virginia Health System · USWayne State University · US

Funding

Mentoring CoreP20GM103418 · NIGMS · UNIVERSITY OF KANSAS MEDICAL CENTER · PI Douglas E Wright · 2012 to 2026
$63.0M
RADx-UP: Improving the Response of Local Urban and Rural Communities to Disparities in Covid-19 TestingUL1TR002366 · NCATS · UNIVERSITY OF KANSAS MEDICAL CENTER · PI Mario Castro, JAMES STEVEN LEEDER · 2017 to 2026
$44.3M
Using PCORnet to Expand the DS-CONNECT Cohort Through Healthcare System Recruitment, Incorporating Electronic Health Records, and Assessing Self-DeterminationU54HD090216 · NICHD · UNIVERSITY OF KANSAS LAWRENCE · PI COLOMBO, JOHN A. · 2016 to 2020
$6.2M
Molecular Regulation of Cell Development and Differentiation Phase III COBREP30GM122731 · NIGMS · UNIVERSITY OF KANSAS MEDICAL CENTER · PI ABRAHAMSON, DALE R · 2017 to 2021
$5.6M
Drug abuse and HIV-associated pulmonary vascular injuryR01HL152832 · NHLBI · UNIVERSITY OF KANSAS MEDICAL CENTER · PI DHILLON, NAVNEET KAUR · 2021 to 2024
$2.8M
Characterization of cocaine induced signaling pathways that enhances HIV transcriptionR01DA041746 · NIDA · THOMAS JEFFERSON UNIVERSITY · PI TYAGI, MUDIT · 2017 to 2023
$2.3M
Diffuse optical spectroscopies to assess cerebral hemodynamics in pediatric sickle cell diseaseR01HL152322 · NHLBI · EMORY UNIVERSITY · PI BUCKLEY, ERIN MCGUIRE, GEE, BEATRICE E · 2021 to 2024
$2.0M
Implications of Notch signaling in HIV associated nephropathyR01DK108433 · NIDDK · UNIVERSITY OF KANSAS MEDICAL CENTER · PI SHARMA, MADHULIKA · 2015 to 2019
$743k
High Throughput Sequencing System for KUMC Genomics CoreS10OD021743 · OD · UNIVERSITY OF KANSAS MEDICAL CENTER · PI SMITH, PETER G · 2017 to 2017
$493k
CBF-1 role in regulating HIV reservoir in microglial cellsR21MH126998 · NIMH · THOMAS JEFFERSON UNIVERSITY · PI TYAGI, MUDIT · 2022 to 2023
$429k
NCATS NIH HHS UL1 TR002366NHLBI NIH HHS R01 HL152322NHLBI NIH HHS R01 HL152832NICHD NIH HHS U54 HD090216NIDA NIH HHS R01 DA041746NIDDK NIH HHS R01 DK108433NIGMS NIH HHS P20 GM103418NIGMS NIH HHS P30 GM122731NIH HHS S10 OD021743NIMH NIH HHS R21 MH126998
6 · The paper itself

Abstract

Antiretroviral therapy (ART) has decreased HIV-1 associated morbidity. However, despite ART, immune cells remain latently infected and slowly release viral proteins, leading to chronic inflammation and HIV-1 associated comorbidities. New strategies are needed to target viral proteins and inflammation. We found activation of Notch3 in several renal cells of the HIV-1 mouse model (HIV-Tg26) and in patients with HIV associated Nephropathy. We hypothesized that targeting Notch3 activation constitutes an effective therapy for HIV-related chronic kidney diseases (HIV-CKD). We generated HIV-Tg26 mice with Notch3 knocked out (Tg-N3KO). Compared to HIV-Tg26 mice at 3 months, HIV-Tg-N3KO mice showed a marked reduction in renal injury, skin lesions and mortality rate. Bulk RNA sequencing revealed that N3KO not only reduced renal infiltrating cells but significantly reduced the expression of HIV genes. Moreover, Notch3 activated the HIV- promoter and induction of HIV-1 resulted in increased Notch3 activation indicating a feedback mechanism. Further, bone marrow derived macrophages (BMDMs) from HIV-Tg26 mice showed activation of Notch3 indicating systemic effects. Consistent with that, systemic levels of TNF-α, MCP-1 and other inflammatory chemokines and cytokines were reduced in Tg-N3KO mice. Thus, Notch3 inhibition/deletion has a dual therapeutic effect in HIV-CKD and may extend to other HIV-related pathologies.

Identifiers

PMID37745500
PMCPMC10515825
OpenAlexW4386747587

What OpenQuestion holds

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.