Evidence map›Paper›PMID 37745420›Full record

ArticlebioRxiv : the preprint server for biology2024

Yizhou Peter Huang, Lauren Harmon, Eve Deering-Gardner, Xiaotu Ma, Josiah Harsh, Zhaoyu Xue, Hong Wen, Marcel Ramos, Sean Davis, Timothy J Triche

Open access · greenAbstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 0 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

  • Updated by
    2025
5 · Who and what money

Authors and funding

10 authors at 4 institutions in 1 country.

Yizhou Peter HuangMichigan State University, East Lansing, MI, US.ORCID 0009-0004-5689-0193
Lauren HarmonVan Andel Institute, Grand Rapids, MI, US.ORCID 0000-0002-2248-0602
Eve Deering-GardnerVan Andel Institute, Grand Rapids, MI, US.ORCID 0009-0009-4133-8343
Xiaotu MaSt. Jude Children's Research Hospital, Memphis, TN, US.ORCID 0000-0002-6233-2145
Josiah HarshVan Andel Institute, Grand Rapids, MI, US.
Zhaoyu XueVan Andel Institute, Grand Rapids, MI, US.ORCID 0000-0001-7288-8780
Hong WenVan Andel Institute, Grand Rapids, MI, US.ORCID 0000-0001-8739-4572
Marcel RamosRoswell Park Cancer Institute, Bufaflo, NY, US.ORCID 0000-0002-3242-0582
Sean DavisUniversity of Colorado Anschutz Medical Campus, Aurora, CO, US.ORCID 0000-0002-8991-6458
Timothy J TricheVan Andel Institute, Grand Rapids, MI, US.ORCID 0000-0001-5665-946X
Van Andel Institute · USRoswell Park Comprehensive Cancer Center · USSt. Jude Children's Research Hospital · USUniversity of Colorado Anschutz Medical Campus · US

Funding

Pathology CoreP50CA254897 · NCI · CORIELL INSTITUTE FOR MEDICAL RESEARCH · PI ISSA, JEAN-PIERRE J. · 2021 to 2025
$11.9M
Cancer Genomics:Integrative and Scalable Solutions in R / BioconductorU24CA180996 · NCI · ROSWELL PARK CANCER INSTITUTE CORP · PI MORGAN, MARTIN T, WALDRON, LEVI · 2014 to 2023
$6.9M
The roles of genetics, hormones, and gender in sexually dimorphic immune responseR01AI171984 · NIAID · VAN ANDEL RESEARCH INSTITUTE · PI KRAWCZYK, CONNIE, PROKOP, JEREMY WILLIAM · 2022 to 2024
$1.4M
NCI NIH HHS P50 CA254897NCI NIH HHS U24 CA180996NIAID NIH HHS R01 AI171984
6 · The paper itself

Abstract

The NCI Genomic Data Commons (GDC) provides controlled access to sequencing data from thousands of subjects, enabling large-scale study of impactful genetic alterations such as simple and complex germline and structural variants. However, efficient analysis requires significant computational resources and expertise, especially when recalling variants from raw sequence reads. We thus developed

Identifiers

PMID37745420
PMCPMC10516001
OpenAlexW4386811387

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.