Evidence map›Paper›PMID 37745327›Full record

ArticlebioRxiv : the preprint server for biology2023

Engineering synthetic phosphorylation signaling networks in human cells.

Xiaoyu Yang, Jason W Rocks, Kaiyi Jiang, Andrew J Walters, Kshitij Rai, Jing Liu, Jason Nguyen, Scott D Olson, Pankaj Mehta, James J Collins and 2 more

Open access · greenAbstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 8 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

12 authors at 6 institutions in 2 countries.

Xiaoyu YangDepartment of Bioengineering, Rice University; Houston, TX 77030, USA.ORCID 0000-0001-5636-117X
Jason W RocksDepartment of Physics, Boston University; Boston, MA 02215, USA.ORCID 0000-0002-0285-0119
Kaiyi JiangDepartment of Bioengineering, Rice University; Houston, TX 77030, USA.ORCID 0000-0002-9569-5225
Andrew J WaltersDepartment of Bioengineering, Rice University; Houston, TX 77030, USA.ORCID 0000-0002-1302-1738
Kshitij RaiGraduate Program in Systems, Synthetic and Physical Biology, Rice University; Houston, TX 77030, USA.ORCID 0000-0003-0193-369X
Jing LiuDepartment of Bioengineering, Rice University; Houston, TX 77030, USA.
Jason NguyenDepartment of Bioengineering, Rice University; Houston, TX 77030, USA.
Scott D OlsonDepartment of Pediatric Surgery, McGovern Medical School, University of Texas Health Science Center at Houston; Houston, TX 77030, USA.ORCID 0000-0001-8032-3755
Pankaj MehtaDepartment of Physics, Boston University; Boston, MA 02215, USA.ORCID 0000-0003-1290-5897
James J CollinsInstitute for Medical Engineering and Science, Department of Biological Engineering, and Synthetic Biology Center, Massachusetts Institute of Technology; Cambridge, MA 02139, USA.ORCID 0000-0002-5560-8246
Nichole M DaringerDepartment of Biomedical Engineering, Rowan University; Glassboro, NJ 08028, USA.ORCID 0000-0002-2026-8130
Caleb J BashorDepartment of Bioengineering, Rice University; Houston, TX 77030, USA.ORCID 0000-0003-1354-2098
Rice University · USBoston University · USBioengineering (Switzerland) · CHBroad Institute · USRowan University · USThe University of Texas Health Science Center · US

Funding

Synthetic toolkit for precision gene expression control and signal processing in mammalian cellsR01EB029483 · NIBIB · HARVARD UNIVERSITY · PI Ahmad Samir Khalil · 2020 to 2026
$5.0M
MODELING EMERGENT BEHAVIORS IN SYSTEMS BIOLOGY: A BIOLOGICAL PHYSICS APPROACHR35GM119461 · NIGMS · BOSTON UNIVERSITY (CHARLES RIVER CAMPUS) · PI Pankaj Mehta · 2016 to 2026
$3.6M
A synthetic signaling pathway engineering platform for creating precision cell-based sense-and-response devicesR01EB032272 · NIBIB · RICE UNIVERSITY · PI BASHOR, CALEB · 2021 to 2024
$1.4M
Reshaping MSC surface expression profiles to target inflammation following CNS traumaR21NS116302 · NINDS · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI OLSON, SCOTT D · 2020 to 2020
$434k
NIBIB NIH HHS R01 EB029483NIBIB NIH HHS R01 EB032272NIGMS NIH HHS R35 GM119461NINDS NIH HHS R21 NS116302
6 · The paper itself

Abstract

Protein phosphorylation signaling networks play a central role in how cells sense and respond to their environment. Here, we describe the engineering of artificial phosphorylation networks in which "push-pull" motifs-reversible enzymatic phosphorylation cycles consisting of opposing kinase and phosphatase activities-are assembled from modular protein domain parts and then wired together to create synthetic phosphorylation circuits in human cells. We demonstrate that the composability of our design scheme enables model-guided tuning of circuit function and the ability to make diverse network connections; synthetic phosphorylation circuits can be coupled to upstream cell surface receptors to enable fast-timescale sensing of extracellular ligands, while downstream connections can regulate gene expression. We leverage these capabilities to engineer cell-based cytokine controllers that dynamically sense and suppress activated T cells. Our work introduces a generalizable approach for designing and building phosphorylation signaling circuits that enable user-defined sense-and-respond function for diverse biosensing and therapeutic applications.

Identifiers

PMID37745327
PMCPMC10515791
OpenAlexW4386689446

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.