ArticleArXiv2024
The Past, Present, and Future of the Brain Imaging Data Structure (BIDS).
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115 authors.
Russell A PoldrackDepartment of Psychology, Stanford University, Stanford, CA, USA.
Christopher J MarkiewiczDepartment of Psychology, Stanford University, Stanford, CA, USA.
Stefan AppelhoffMax Planck Institute for Human Development, Berlin, Germany.
Yoni K AsharUniversity of Colorado Anschutz Medical Campus, Aurora, CO, USA.
Tibor AuerSchool of Psychology, University of Surrey, Guildford, UK.
Sylvain BailletMcConnell Brain Imaging Centre, Montréal Neurological Institute, McGill University, Montréal, Canada.
Shashank BansalDepartment of Bioengineering, University of California, San Diego, La Jolla, CA, USA.
Leandro BeltrachiniCardiff University Brain Research Imaging Centre (CUBRIC), School of Physics and Astronomy, Cardiff University, Wales, UK.
Christian G BenarAix Marseille Université, INSERM, INS, Inst Neurosci Syst, Marseille, France.
Giacomo BertazzoliNeurophysiology Lab, IRCCS Istituto Centro San Giovanni di Dio Fatebenefratelli, Brescia, Italy.
Suyash BhogawarRackspace Technology, San Antonio, TX, USA.
Ross W BlairDepartment of Psychology, Stanford University, Stanford, CA, USA.
Marta BortolettoNeurophysiology Lab, IRCCS Istituto Centro San Giovanni di Dio Fatebenefratelli, Brescia, Italy.
Mathieu BoudreauNeuroPoly Lab, Polytechnique Montréal, Montréal, Quebec, Canada.
Teon L BrooksDepartment of Psychology, Stanford University, Stanford, CA, USA.
Vince D CalhounTri-institutional Center for Translational Research in Neuroimaging and Data Science (TReNDS), Georgia State, Georgia Tech, Emory, Atlanta, GA, USA.
Filippo Maria CastelliEuropean Laboratory for Non-Linear Spectroscopy (LENS), University of Florence, Sesto Fiorentino, Italy.
Patricia ClementDepartment of Medical Imaging, Ghent University Hospital, Ghent, Belgium.
Alexander L CohenDepartment of Neurology, Boston Children's Hospital, Boston, MA, USA.
Julien Cohen-AdadNeuroPoly Lab, Polytechnique Montréal, Montréal, Quebec, Canada.
Sasha D'AmbrosioDipartimento di Scienze della Salute dell'Università degli Studi di Milano, Milan, Italy.
Gilles de HollanderZurich Center for Neuroeconomics, Department of Economics, University of Zurich, Zurich, Switzerland.
María de la Iglesia-VayáUMIB-FISABIO, Valencia, Spain.
Alejandro de la VegaThe University of Texas at Austin, Austin, TX, USA.
Arnaud DelormeSCCN, University of California, San Diego, La Jolla CA USA.
Orrin DevinskyDepartment of Neurology, NYU Langone Medical Center, New York, NY, USA.
Dejan DraschkowDepartment of Experimental Psychology, University of Oxford, Oxford, UK.
Eugene Paul DuffUK Dementia Research Institute, Department of Brain Sciences, Imperial College London, London, UK.
Elizabeth DuPreDepartment of Psychology, Stanford University, Stanford, CA, USA.
Eric EarlIntramural Research Program, National Institute of Mental Health, Bethesda, MD, USA.
Oscar EstebanDepartment of Radiology, Lausanne University Hospital and University of Lausanne, Lausanne, Switzerland.
Franklin W FeingoldDepartment of Psychology, Stanford University, Stanford, CA, USA.
Guillaume FlandinWellcome Centre for Human Neuroimaging, University College London, London, England, UK.
Anthony GalassiIntramural Research Program, National Institute of Mental Health, Bethesda, MD, USA.
Giuseppe GallittoCenter for Translational Neuro- and Behavioral Sciences, University Medicine Essen, Essen, Germany.
Melanie GanzDepartment of Computer Science, University of Copenhagen, Copenhagen, Denmark.
Rémi GauOrigamin Lab, The Neuro, McGill University, Montreal, Quebec, Canada.
James GholamCardiff University Brain Research Imaging Centre (CUBRIC), School of Psychology, Cardiff University, Wales, UK.
Satrajit S GhoshMassachusetts Institute of Technology, Cambridge, MA, USA.
Alessio GiacomelDepartment of Neuroimaging, Institute of Psychiatry, Psychology and Neuroscience, King's College London, London, England, UK.
Ashley G GillmanThe Australian e-Health Research Centre, Commonwealth Scientific and Industrial Research Organisation, Townsville, Queensland, Australia.
Padraig GleesonDepartment of Neuroscience, Physiology and Pharmacology, University College London, London, England, UK.
Alexandre GramfortInria, CEA, Université Paris-Saclay, Palaiseau, France.
Samuel GuayUniversité de Montréal, Montréal, QC, Canada.
Giacomo GuidaliDepartment of Psychology & NeuroMI - Milan Centre for Neuroscience, University of Milano-Bicocca, Milan, Italy.
Yaroslav O HalchenkoCenter for Open Neuroscience, Department of Psychological and Brain Sciences, Dartmouth College, NH, USA.
Daniel A HandwerkerIntramural Research Program, National Institute of Mental Health, Bethesda, MD, USA.
Nell HardcastleDepartment of Psychology, Stanford University, Stanford, CA, USA.
Peer HerholzMcConnell Brain Imaging Centre, Montréal Neurological Institute, McGill University, Montréal, Quebec, Canada.
Dora HermesDepartment of Physiology and Biomedical Engineering, Mayo Clinic, Rochester, MN, USA.
Christopher J HoneyDepartment of Psychological & Brain Sciences, Johns Hopkins University, Baltimore, MD, USA.
Robert B InnisIntramural Research Program, National Institute of Mental Health, Bethesda, MD, USA.
Horea-Ioan IoanasCenter for Open Neuroscience, Department of Psychological and Brain Sciences, Dartmouth College, NH, USA.
Andrew JahnFunctional MRI Laboratory, University of Michigan, Ann Arbor, MI, USA.
Agah KarakuzuNeuroPoly Lab, Polytechnique Montréal, Montréal, Quebec, Canada.
David B KeatorChange Your Brain Change Your Life Foundation, Costa Mesa, CA, USA.
Gregory KiarCenter for Data Analytics, Innovation, and Rigor, Child Mind Institute, New York, NY USA.
Balint KincsesCenter for Translational Neuro- and Behavioral Sciences, University Medicine Essen, Essen, Germany.
Angela R LairdDepartment of Physics, Florida International University, Miami, FL, USA.
Jonathan C LauDepartment of Clinical Neurological Sciences, Western University, London, Ontario, Canada.
Alberto LazariWellcome Centre for Integrative Neuroimaging, FMRIB, Nuffield Department of Clinical Neurosciences, University of Oxford, Oxford, UK.
Jon Haitz LegarretaDepartment of Radiology, Brigham and Women's Hospital, Mass General Brigham/Harvard Medical School, Boston, MA, USA.
Adam LiColumbia University, New York, NY, USA.
Xiangrui LiCenter for Cognitive and Behavioral Brain Imaging, The Ohio State University, Columbus, OH, USA.
Bradley C LoveUniversity College London, London, UK.
Hanzhang LuJohns Hopkins University School of Medicine, Baltimore, MD, USA.
Eleonora MarcantoniSchool for Psychology and Neuroscience and Centre for Cognitive Neuroimaging, University of Glasgow, Glasgow.
Camille MaumetInria, Univ Rennes, CNRS, Inserm, IRISA UMR 6074, Empenn ERL U 1228, Rennes, France.
Giacomo MazzamutoNational Research Council - National Institute of Optics (CNR-INO), Florence, Italy.
Steven L MeislerProgram in Speech and Hearing Bioscience and Technology, Harvard University, Cambridge, MA, USA.
Mark MikkelsenDepartment of Radiology, Weill Cornell Medicine, New York, NY, USA.
Henk MutsaertsRadiology and Nuclear Medicine, Vrije Universiteit Amsterdam, Amsterdam UMC location VUmc, Amsterdam, The Netherlands.
Thomas E NicholsBig Data Institute, Li Ka Shing Centre for Health Information and Discovery, Nuffield Department of Population Health, University of Oxford, Oxford, UK.
Aki NikolaidisCenter for the Developing Brain, Child Mind Institute, New York, NY, USA.
Gustav NilsonneDepartment of Clinical Neuroscience, Karolinska Institutet, Stockholm, Sweden.
Guiomar NisoInstituto Cajal, CSIC, Madrid, Spain.
Martin NorgaardIntramural Research Program, National Institute of Mental Health, Bethesda, MD, USA.
Thomas W OkellWellcome Centre for Integrative Neuroimaging, FMRIB, Nuffield Department of Clinical Neurosciences, University of Oxford, Oxford, UK.
Robert OostenveldDonders Institute for Brain, Cognition and Behaviour, Radboud University Nijmegen, Nijmegen, The Netherlands.
Eduard OrtHeinrich Heine University, Department of Biological Psychology of Decision Making, Düsseldorf, Germany.
Patrick J ParkWestern University, London, Ontario, Canada.
Mateusz PawlikParis-Lodron-University of Salzburg, Department of Psychology, Centre for Cognitive Neuroscience, Salzburg, Austria.
Cyril R PernetNeurobiology Research Unit, Copenhagen University Hospital, Copenhagen, Denmark.
Franco PestilliThe University of Texas at Austin, Austin, TX, USA.
Jan PetrHelmholtz-Zentrum Dresden-Rossendorf, Institute of Radiopharmaceutical Cancer Research, Dresden, Germany.
Christophe PhillipsGIGA CRC in vivo imaging, Liege University, Liege, Belgium.
Jean-Baptiste PolineNeuro Data Science ORIGAMI Laboratory, McConnell Brain Imaging Centre, Faculty of Medicine, McGill University, Montréal, Canada.
Luca PolloniniDepartment of Engineering Technology, University of Houston, Houston, TX.
Pradeep Reddy RaamanaUniversity of Pittsburgh, Pittsburgh, PA, USA.
Petra RitterBerlin Institute of Health at Charité, Universitätsmedizin Berlin, Charitéplatz 1, Berlin 10117, Germany.
Gaia RizzoInvicro, London, UK.
Kay A RobbinsDepartment of Computer Science, University of Texas at San Antonio, San Antonio, TX, USA.
Alexander P RockhillDepartment of Neurosurgery, Oregon Health & Science University, Portland, OR, USA.
Christine RogersMcGill Centre for Integrative Neuroscience (MCIN), Montréal Neurological Institute, McGill University, Montréal, QC, Canada.
Ariel RokemUniversity of Washington, Department of Psychology and eScience Institute, Seattle, WA, USA.
Chris RordenUniversity of South Carolina, Department of Psychology, Columbia, SC, USA.
Alexandre RoutierInria, Institut du Cerveau - Paris Brain Institute, Paris, France.
Jose Manuel Saborit-TorresUMIB-FISABIO, Valencia, Spain.
Taylor SaloLifespan Informatics and Neuroimaging Center (PennLINC), Department of Psychiatry, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
Michael SchirnerBerlin Institute of Health at Charité, Universitätsmedizin Berlin, Charitéplatz 1, Berlin 10117, Germany.
Robert E SmithThe Florey Institute of Neuroscience and Mental Health, Heidelberg, Victoria, Australia.
Tamas SpisakCenter for Translational Neuro- and Behavioral Sciences, University Medicine Essen, Essen, Germany.
Julia SprengerInstitut de Neurosciences de la Timone (INT), UMR7289, CNRS, Aix-Marseille Université, France.
Nicole C SwannUniversity of Oregon, Department of Human Physiology, Eugene, OR, USA.
Martin SzinteInstitut de Neurosciences de la Timone (INT), UMR7289, CNRS, Aix-Marseille Université, France.
Sylvain TakerkartInstitut de Neurosciences de la Timone (INT), UMR7289, CNRS, Aix-Marseille Université, France.
Bertrand ThirionInria, CEA, Université Paris-Saclay, Palaiseau, France.
Adam G ThomasIntramural Research Program, National Institute of Mental Health, Bethesda, MD, USA.
Sajjad TorabianUniversity of California, Irvine, CA, USA.
Gael VaroquauxInria, Université Paris Saclay, Saclay, France.
Bradley VoytekDepartment of Cognitive Science, Halıcıoğlu Data Science Institute, and Neurosciences Graduate Program, University of California, San Diego, La Jolla, CA, USA.
Julius WelzelKiel University, Kiel, Germany.
Martin WilsonUniversity of Birmingham, Centre for Human Brain Health and School of Psychology, Birmingham, UK.
Tal YarkoniGoogle X. Mountain View, CA USA.
Krzysztof J GorgolewskiDepartment of Psychology, Stanford University, Stanford, CA, USA.
Funding
Resource DiscoveryP41EB019936 · NIBIB · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI David Nelson Kennedy · 2016 to 2026
$15.2MOpenNeuro: An open archive for analysis and sharing of BRAIN Initiative dataR24MH117179 · NIMH · STANFORD UNIVERSITY · PI Russell A Poldrack · 2018 to 2026
$11.6MDANDI: Distributed Archives for Neurophysiology Data IntegrationR24MH117295 · NIMH · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI Satrajit Sujit Ghosh, Yaroslav O Halchenko · 2019 to 2026
$11.6MBRAIN project: OpenNeuroPET: An Archive for PET dataZIAMH002977 · NIMH · NATIONAL INSTITUTE OF MENTAL HEALTH · PI INNIS, ROBERT · 2021 to 2025
$3.3MNeuroScout: A cloud-based platform for flexible re-analysis of naturalistic fMRI datasetsR01MH109682 · NIMH · UNIVERSITY OF TEXAS AT AUSTIN · PI DE LA VEGA, ALEJANDRO · 2016 to 2020
$3.0MNipype: Dataflows for Reproducible Biomedical ResearchR01EB020740 · NIBIB · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI GHOSH, SATRAJIT SUJIT · 2016 to 2019
$2.7MBIDS-Derivatives: A data standard for derived data and models in the BRAIN InitiativeR24MH114705 · NIMH · STANFORD UNIVERSITY · PI POLDRACK, RUSSELL A · 2017 to 2018
$1.4MBRAIN Initiative: Hierarchical Event Descriptors (HED): a system to characterize events in neurobehavioral dataRF1MH126700 · NIMH · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI DELORME, ARNAUD, MAKEIG, SCOTT · 2022 to 2022
$1.0MA community-driven development of the brain imaging data standard (BIDS) to describe macroscopic brain connectionsR01MH126699 · NIMH · UNIVERSITY OF TEXAS AT AUSTIN · PI PESTILLI, FRANCO · 2021 to 2022
$681kIntramural NIH HHS ZIA MH002977NIBIB NIH HHS P41 EB019936NIBIB NIH HHS R01 EB020740NIMH NIH HHS R01 MH109682NIMH NIH HHS R01 MH126699NIMH NIH HHS R24 MH114705NIMH NIH HHS R24 MH117179NIMH NIH HHS R24 MH117295NIMH NIH HHS RF1 MH126700
Abstract
The Brain Imaging Data Structure (BIDS) is a community-driven standard for the organization of data and metadata from a growing range of neuroscience modalities. This paper is meant as a history of how the standard has developed and grown over time. We outline the principles behind the project, the mechanisms by which it has been extended, and some of the challenges being addressed as it evolves. We also discuss the lessons learned through the project, with the aim of enabling researchers in other domains to learn from the success of BIDS.
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37744469PMC
PMC10516110What OpenQuestion holds
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