Evidence map›Paper›PMID 37741838›Full record

ArticleNature communications2023

Structure of the peroxisomal Pex1/Pex6 ATPase complex bound to a substrate.

Maximilian Rüttermann, Michelle Koci, Pascal Lill, Ermis Dionysios Geladas, Farnusch Kaschani, Björn Udo Klink, Ralf Erdmann, Christos Gatsogiannis

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 17 citations in OpenAlex.

  1. Review
  2. Review
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. PEX1The Journal of biological chemistry · 2025
    Article
  12. Article
  13. The peroxisome: an update on mysteries 3.0.Histochemistry and cell biology · 2024
    Review
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 1 country.

Maximilian RüttermannInstitute for Medical Physics and Biophysics, University Münster, Münster, Germany.ORCID http://orcid.org/0000-0001-6509-3998
Michelle KociDepartment of Structural Biochemistry, Max Planck Institute of Molecular Physiology, Dortmund, Germany.
Pascal LillInstitute for Medical Physics and Biophysics, University Münster, Münster, Germany.
Ermis Dionysios GeladasInstitute for Medical Physics and Biophysics, University Münster, Münster, Germany.ORCID http://orcid.org/0000-0003-4364-137X
Farnusch KaschaniAnalytics Core Facility Essen, Center of Medical Biotechnology (ZMB), Faculty of Biology, University of Duisburg-Essen, Essen, Germany.ORCID http://orcid.org/0000-0001-6572-3232
Björn Udo KlinkInstitute for Medical Physics and Biophysics, University Münster, Münster, Germany.ORCID http://orcid.org/0000-0002-0946-4456
Ralf ErdmannInstitute for Biochemistry and Pathobiochemistry, Department of Systems Biochemistry, Ruhr-University Bochum, Bochum, Germany.ORCID http://orcid.org/0000-0001-8380-0342
Christos GatsogiannisInstitute for Medical Physics and Biophysics, University Münster, Münster, Germany. christos.gatsogiannis@uni-muenster.de.ORCID http://orcid.org/0000-0002-4922-4545
University of Münster · DEMax Planck Institute of Molecular Physiology · DERuhr University Bochum · DEUniversity of Duisburg-Essen · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The double-ring AAA+ ATPase Pex1/Pex6 is required for peroxisomal receptor recycling and is essential for peroxisome formation. Pex1/Pex6 mutations cause severe peroxisome associated developmental disorders. Despite its pathophysiological importance, mechanistic details of the heterohexamer are not yet available. Here, we report cryoEM structures of Pex1/Pex6 from Saccharomyces cerevisiae, with an endogenous protein substrate trapped in the central pore of the catalytically active second ring (D2). Pairs of Pex1/Pex6(D2) subdomains engage the substrate via a staircase of pore-1 loops with distinct properties. The first ring (D1) is catalytically inactive but undergoes significant conformational changes resulting in alternate widening and narrowing of its pore. These events are fueled by ATP hydrolysis in the D2 ring and disengagement of a "twin-seam" Pex1/Pex6(D2) heterodimer from the staircase. Mechanical forces are propagated in a unique manner along Pex1/Pex6 interfaces that are not available in homo-oligomeric AAA-ATPases. Our structural analysis reveals the mechanisms of how Pex1 and Pex6 coordinate to achieve substrate translocation.

Indexed as

PeroxisomesProton-Translocating ATPasesSaccharomyces cerevisiae ProteinsATPases Associated with Diverse Cellular ActivitiesCryoelectron MicroscopyMembrane ProteinsMutationSaccharomyces cerevisiaeSubstrate SpecificityATPases Associated with Diverse Cellular ActivitiesMembrane ProteinsPEX1 protein, S cerevisiaePEX6 protein, S cerevisiaeProton-Translocating ATPasesSaccharomyces cerevisiae Proteins

Identifiers

PMID37741838
PMCPMC10518020
OpenAlexW4386980275

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.