Evidence map›Paper›PMID 37740179›Full record

ArticleJournal of translational medicine2023

Transcriptional landscape of Kaposi sarcoma tumors identifies unique immunologic signatures and key determinants of angiogenesis.

Ramya Ramaswami, Takanobu Tagawa, Guruswamy Mahesh, Anna Serquina, Vishal Koparde, Kathryn Lurain, Sarah Dremel, Xiaofan Li, Ameera Mungale, Alex Beran and 10 more

Open access · goldAbstract read
In one paragraph

Article in Journal of translational medicine, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
4.4field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 19 citations in OpenAlex.

  1. Review
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  9. Viral oncogenesis in cancer: from mechanisms to therapeutics.Signal transduction and targeted therapy · 2025
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 2 institutions in 1 country.

Ramya RamaswamiHIV and AIDS Malignancy Branch, National Cancer Institute, Bethesda, MD, 20892, USA.
Takanobu TagawaHIV and AIDS Malignancy Branch, National Cancer Institute, Bethesda, MD, 20892, USA.
Guruswamy MaheshHIV and AIDS Malignancy Branch, National Cancer Institute, Bethesda, MD, 20892, USA.
Anna SerquinaHIV and AIDS Malignancy Branch, National Cancer Institute, Bethesda, MD, 20892, USA.
Vishal KopardeFrederick National Laboratory for Cancer Research, Frederick, MD, USA.
Kathryn LurainHIV and AIDS Malignancy Branch, National Cancer Institute, Bethesda, MD, 20892, USA.
Sarah DremelHIV and AIDS Malignancy Branch, National Cancer Institute, Bethesda, MD, 20892, USA.
Xiaofan LiHIV and AIDS Malignancy Branch, National Cancer Institute, Bethesda, MD, 20892, USA.
Ameera MungaleHIV and AIDS Malignancy Branch, National Cancer Institute, Bethesda, MD, 20892, USA.
Alex BeranHIV and AIDS Malignancy Branch, National Cancer Institute, Bethesda, MD, 20892, USA.
Zoe Weaver OhlerFrederick National Laboratory for Cancer Research, Frederick, MD, USA.
Laura BasselFrederick National Laboratory for Cancer Research, Frederick, MD, USA.
Andrew WarnerFrederick National Laboratory for Cancer Research, Frederick, MD, USA.
Ralph MangusanHIV and AIDS Malignancy Branch, National Cancer Institute, Bethesda, MD, 20892, USA.
Anaida WidellHIV and AIDS Malignancy Branch, National Cancer Institute, Bethesda, MD, 20892, USA.
Irene EkwedeHIV and AIDS Malignancy Branch, National Cancer Institute, Bethesda, MD, 20892, USA.
Laurie T KrugHIV and AIDS Malignancy Branch, National Cancer Institute, Bethesda, MD, 20892, USA.
Thomas S UldrickHIV and AIDS Malignancy Branch, National Cancer Institute, Bethesda, MD, 20892, USA.
Robert YarchoanHIV and AIDS Malignancy Branch, National Cancer Institute, Bethesda, MD, 20892, USA.
Joseph M ZiegelbauerHIV and AIDS Malignancy Branch, National Cancer Institute, Bethesda, MD, 20892, USA. ziegelbauerjm@nih.gov.ORCID http://orcid.org/0000-0001-6464-6941
National Cancer Institute · USFrederick National Laboratory for Cancer Research · US

Funding

Functions of KSHV microRNAs and circular RNAsZIABC011176 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI ZIEGELBAUER, JOSEPH · 2009 to 2025
$14.0M
Intramural NIH HHS ZIA BC011176
6 · The paper itself

Abstract

backgroundKaposi sarcoma (KS) is a multicentric tumor caused by Kaposi sarcoma herpesvirus (KSHV) that leads to morbidity and mortality among people with HIV worldwide. KS commonly involves the skin but can occur in the gastrointestinal tract (GI) in severe cases.

methodsRNA sequencing was used to compare the cellular and KSHV gene expression signatures of skin and GI KS lesions in 44 paired samples from 19 participants with KS alone or with concurrent KSHV-associated diseases. Analyses of KSHV expression from KS lesions identified transcriptionally active areas of the viral genome.

resultsThe transcript of an essential viral lytic gene, ORF75, was detected in 91% of KS lesions. Analyses of host genes identified 370 differentially expressed genes (DEGs) unique to skin KS and 58 DEGs unique to GI KS lesions as compared to normal tissue. Interleukin (IL)-6 and IL-10 gene expression were higher in skin lesions as compared to normal skin but not in GI KS lesions. Twenty-six cellular genes were differentially expressed in both skin and GI KS tissues: these included Fms-related tyrosine kinase 4 (FLT4), encoding an angiogenic receptor, and Stanniocalcin 1 (STC1), a secreted glycoprotein. FLT4 and STC1 were further investigated in functional studies using primary lymphatic endothelial cells (LECs). In these models, KSHV infection of LECs led to increased tubule formation that was impaired upon knock-down of STC1 or FLT4.

conclusionsThis study of transcriptional profiling of KS tissue provides novel insights into the characteristics and pathogenesis of this unique virus-driven neoplasm.

Indexed as

Herpesvirus 8, HumanSarcoma, KaposiSkin NeoplasmsEndothelial CellsHumansInterleukin-6SkinInterleukin-6

Identifiers

PMID37740179
PMCPMC10517594
OpenAlexW4386947706

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.