Evidence map›Paper›PMID 37739935›Full record

ArticleNature communications2023

Genotypic diversity and unrecognized antifungal resistance among populations of Candida glabrata from positive blood cultures.

Hassan Badrane, Shaoji Cheng, Christopher L Dupont, Binghua Hao, Eileen Driscoll, Kristin Morder, Guojun Liu, Anthony Newbrough, Giuseppe Fleres, Drishti Kaul and 3 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
8.2field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 42 citations in OpenAlex.

  1. Article
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  14. Review
  15. Review
  16. Antifungal Testing of VaginalJournal of fungi (Basel, Switzerland) · 2025
    Article
  17. Article
  18. Article
  19. Article
  20. Microbe Profile:Microbiology (Reading, England) · 2024
    Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

13 authors at 2 institutions in 1 country.

Hassan BadraneUniversity of Pittsburgh, Pittsburgh, PA, USA.ORCID http://orcid.org/0009-0009-7412-0199
Shaoji ChengUniversity of Pittsburgh, Pittsburgh, PA, USA.
Christopher L DupontJ. Craig Venter Institute, La Jolla, CA, 92037, USA.ORCID http://orcid.org/0000-0002-0896-6542
Binghua HaoUniversity of Pittsburgh, Pittsburgh, PA, USA.
Eileen DriscollUniversity of Pittsburgh, Pittsburgh, PA, USA.
Kristin MorderUniversity of Pittsburgh, Pittsburgh, PA, USA.
Guojun LiuUniversity of Pittsburgh, Pittsburgh, PA, USA.
Anthony NewbroughUniversity of Pittsburgh, Pittsburgh, PA, USA.
Giuseppe FleresUniversity of Pittsburgh, Pittsburgh, PA, USA.
Drishti KaulJ. Craig Venter Institute, La Jolla, CA, 92037, USA.
Josh L EspinozaJ. Craig Venter Institute, La Jolla, CA, 92037, USA.
Cornelius J Clancy *University of Pittsburgh, Pittsburgh, PA, USA.
M Hong Nguyen *University of Pittsburgh, Pittsburgh, PA, USA. mhn5@pitt.edu.ORCID http://orcid.org/0000-0003-2065-3239
University of Pittsburgh · USJ. Craig Venter Institute · US

Funding

Identifying Influenza Virus Infection Severity and Outcome Signatures Through Artificial Intelligence-driven AnalysesR01AI170111 · NIAID · J. CRAIG VENTER INSTITUTE, INC. · PI Christopher L. Dupont · 2022 to 2026
$3.0M
The nasopharyngeal microbiota of African children and lower respiratory tract infectionU54HG009824 · NHGRI · UNIVERSITY OF CAPE TOWN · PI NICOL, MARK PATRICK · 2017 to 2021
$2.9M
High-Throughput Computing for Genomics and Bioinformatics ResearchS10OD028483 · OD · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI LEE, ADRIAN V · 2021 to 2021
$574k
Genomic diversity of Candida bloodstream infectionsR21AI160098 · NIAID · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI NGUYEN, M. HONG THI · 2021 to 2022
$499k
Polyclonality of carbapenem resistant Enterobacteriaceae bloodstream infectionsR21AI152018 · NIAID · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI CLANCY, CORNELIUS J · 2021 to 2022
$462k
BLRD VA I01 BX001955NHGRI NIH HHS U54 HG009824NIAID NIH HHS R01 AI170111NIAID NIH HHS R21 AI152018NIAID NIH HHS R21 AI160098NIH HHS S10 OD028483
6 · The paper itself

Abstract

The longstanding model is that most bloodstream infections (BSIs) are caused by a single organism. We perform whole genome sequencing of five-to-ten strains from blood culture (BC) bottles in each of ten patients with Candida glabrata BSI. We demonstrate that BCs contain mixed populations of clonal but genetically diverse strains. Genetically distinct strains from two patients exhibit phenotypes that are potentially important during BSIs, including differences in susceptibility to antifungal agents and phagocytosis. In both patients, the clinical microbiology lab recovered a fluconazole-susceptible index strain, but we identify mixed fluconazole-susceptible and -resistant populations. Diversity in drug susceptibility is likely clinically relevant, as fluconazole-resistant strains were subsequently recovered by the clinical laboratory during persistent or relapsing infections. In one patient, unrecognized respiration-deficient small colony variants are fluconazole-resistant and significantly attenuated for virulence during murine candidiasis. Our data suggest a population-based model of C. glabrata genotypic and phenotypic diversity during BSIs.

Indexed as

Antifungal AgentsSepsisAnimalsBlood CultureCandida glabrataFluconazoleGenotypeHumansMiceAntifungal AgentsFluconazole

Identifiers

PMID37739935
PMCPMC10516878
OpenAlexW4386968272

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.