Evidence map›Paper›PMID 37738247›Full record

ArticlePLoS medicine2023

Recommendations on data sharing in HIV drug resistance research.

Seth C Inzaule, Mark J Siedner, Susan J Little, Santiago Avila-Rios, Alisen Ayitewala, Ronald J Bosch, Vincent Calvez, Francesca Ceccherini-Silberstein, Charlotte Charpentier, Diane Descamps and 36 more

Open access · goldAbstract read
In one paragraph

Article in PLoS medicine, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 10 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

46 authors at 20 institutions in 19 countries.

Seth C InzauleAmsterdam Institute for Global Health and Development, and Department of Global Health, Amsterdam UMC, University of Amsterdam, Amsterdam, the Netherlands.
Mark J SiednerDepartment of Medicine, Harvard Medical School, Boston, Massachusetts, United States of America.ORCID 0000-0003-3506-842X
Susan J LittleDivision of Infectious Diseases and Global Public Health, Department of Medicine, University of California San Diego, San Diego, California, United States of America.ORCID 0000-0002-7645-9737
Santiago Avila-RiosCentre for Research in Infectious Diseases, National Institute of Respiratory Diseases, Mexico City, Mexico.ORCID 0000-0003-3371-4248
Alisen AyitewalaNational Health Laboratories and Diagnostic Services, Ministries of Health, Kampala, Uganda.
Ronald J BoschCenter for Biostatistics in AIDS Research, Harvard TH Chan School of Public Health, Boston, Massachusetts, United States of America.
Vincent CalvezSorbonne Université, INSERM, Institut Pierre Louis d'Epidémiologie et de Santé Publique (iPLESP), AP-HP, Hôpital Pitié-Salpêtrière, Service de Virologie, Paris, France.
Francesca Ceccherini-SilbersteinDepartment of Experimental Medicine, University of Rome Tor Vergata, Rome, Italy.
Charlotte CharpentierService de Virologie, Université Paris Cité, INSERM, IAME, UMR 1137, AP-HP, Hôpital Bichat-Claude Bernard, F-75018 Paris, France.ORCID 0000-0002-6441-7054
Diane DescampsService de Virologie, Université Paris Cité, INSERM, IAME, UMR 1137, AP-HP, Hôpital Bichat-Claude Bernard, F-75018 Paris, France.
Susan H EshlemanDepartment of Pathology, Johns Hopkins University School of Medicine, Baltimore, Maryland, United States of America.ORCID 0000-0002-4587-791X
Joseph FokamVirology Laboratory, Chantal BIYA International Reference Centre for Research on HIV/AIDS Prevention and Management, Yaoundé, Cameroon, and Faculty of Health Sciences, University of Buea, Yaoundé, Cameroon.ORCID 0000-0002-1501-2763
Lisa M FrenkelDepartment of Pediatrics, University of Washington, Seattle, Washington, United States of America.ORCID 0000-0001-9566-8959
Ravindra K GuptaCambridge Institute of Therapeutic Immunology and Infectious Diseases, University of Cambridge, Cambridge, United Kingdom.
John P A IoannidisDepartment of Medicine, Department of Epidemiology and Population Health, and Meta-Research Innovation Center at Stanford (METRICS), Stanford University, Stanford, California, United States of America.
Pontiano KaleebuMedical Research Council/Uganda Virus Research Institute and London School of Hygiene and Tropical Medicine, Entebbe, Uganda.
Rami KantorDepartment of Medicine, Brown University, The Miriam Hospital, Providence, Rhode Island, United States of America.ORCID 0000-0003-3659-1108
Seble G KassayeDepartment of Medicine, Division of Infectious Diseases, Georgetown University, Washington DC, United States of America.
Sergei L Kosakovsky PondInstitute for Genomics and Evolutionary Medicine, Temple University, Philadelphia, Pennsylvania, United States of America.
Vinie KouamouFaculty of Medicine and Health Sciences, University of Zimbabwe, Harare, Zimbabwe.ORCID 0000-0003-3531-7780
Roger D KouyosDepartment of Infectious Diseases and Hospital Epidemiology, University Hospital Zurich, Zurich, Switzerland and Institute of Medical Virology, University of Zurich, Zurich, Switzerland.
Daniel R KuritzkesDivision of Infectious Diseases, Department of Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, Massachusetts, United States of America.
Richard LessellsAffiliation is KwaZulu-Natal Research Innovation & Sequencing Platform, University of KwaZulu-Natal, Durban, South Africa.ORCID 0000-0003-0926-710X
Anne-Genevieve MarcelinSorbonne Université, INSERM, Institut Pierre Louis d'Epidémiologie et de Santé Publique, AP-HP, Hôpitaux Universitaires Pitié-Salpêtrière-Charles Foix, Laboratoire de Virologie, Paris, France.
Lawrence MbuagbawDepartment of Health Research Methods, Evidence, and Impact, McMaster University, Hamilton, Canada.ORCID 0000-0001-5855-5461
Brian MinalgaOffice of HIV/AIDS Network Coordination, Fred Hutchinson Cancer Center, Seattle, Washington, United States of America.ORCID 0000-0002-8447-390X
Nicaise NdembiInstitute of Human Virology Nigeria, Herbert Macaulay Way, Abuja, Nigeria.
Richard A NeherBiozentrum, University of Basel, Basel, Switzerland.
Roger ParedesDepartment of Infectious Diseases & irsiCaixa, Hospital Universitari Germans Trias i Pujol, Badalona, Catalonia, Spain.ORCID 0000-0002-6553-691X
Deenan PillayDivision of Infection and Immunity, University College London, London, United Kingdom.ORCID 0000-0003-2431-244X
Elliot G RaizesUnited States Centers for Disease Control and Prevention, Atlanta, Georgia, United States of America.
Soo-Yon RheeDivision of Infectious Diseases, Department of Medicine, Stanford University, Stanford, California, United States of America.ORCID 0000-0002-1231-6542
Douglas D RichmanCenter for AIDS Research, Department of Medicine, University of California San Diego, San Diego, California, United States of America.ORCID 0000-0003-0962-9254
Kiat RuxrungthamSchool of Global Health, Faculty of Medicine, Chulalongkorn University, Bangkok, Thailand.
Pardis C SabetiBroad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America.ORCID 0000-0002-9843-1890
Jonathan M SchapiroNational Hemophilia Center, Sheba Medical Center, Ramat Gan, Israel.
Sunee SirivichayakulFaculty of Medicine, Chulalongkorn University, Bangkok, Thailand.
Kim SteegenDepartment of Molecular Medicine and Haematology, National Health Laboratory Service, Johannesburg, South Africa.ORCID 0000-0003-3226-7685
Wataru SugiuraCenter for Clinical Sciences, National Center for Global Health and Medicine, Tokyo, Japan.
Gert U van ZylDivision of Medical Virology, Stellenbosch University and National Health Laboratory Service, Cape Town, South Africa.
Anne-Mieke VandammeKU Leuven, Department of Microbiology, Immunology and Transplantation, Rega Institute for Medical Research, Clinical and Epidemiological Virology, Leuven, Belgium.
Annemarie M J WensingUniversity Medical Center Utrecht, the Netherlands and Wits Reproductive Health and HIV Institute, University of the Witwatersrand, Johannesburg, South Africa.
Joel O WertheimDepartment of Medicine, University of California San Diego, San Diego, La Jolla, California, United States of America.
Huldrych F GunthardDepartment of Infectious Diseases and Hospital Epidemiology, University Hospital Zurich, Zurich, Switzerland and Institute of Medical Virology, University of Zurich, Zurich, Switzerland.ORCID 0000-0002-1142-6723
Michael R JordanDepartment of Medicine, Tufts University School of Medicine, Boston, Massachusetts, United States of America.
Robert W ShaferDivision of Infectious Diseases, Department of Medicine, Stanford University, Stanford, California, United States of America.ORCID 0000-0003-2513-2643
Stanford University · USChulalongkorn University · THInserm · FRNational Health Laboratory Service · ZAUniversité Claude Bernard Lyon 1 · FRUniversity of California San Diego · USUniversity of Zurich · CHAmsterdam Institute for Global Health and Development · NLBrigham and Women's Hospital · USBroad Institute · USBrown University · USCancer Research And Biostatistics · USCenters for Disease Control and Prevention · USFred Hutch Cancer Center · USGeorgetown University · USHarvard University · USHospital Universitari Germans Trias i Pujol · ESImpact · CAInstitute of Human Virology · NGJohns Hopkins University · US

Funding

Statistical and Data Management Center (SDMC), AIDS Clinical Trials Group (ACTG)UM1AI068634 · NIAID · HARVARD UNIVERSITY D/B/A HARVARD SCHOOL OF PUBLIC HEALTH · PI Marlene Ann Cooper, Michael David Hughes · 2011 to 2026
$246.6M
VirologyP30AI036214 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI David Mitchell Smith · 1994 to 2026
$78.4M
HIV Drug Resistance DatabaseR24AI136618 · NIAID · STANFORD UNIVERSITY · PI ROBERT William SHAFER · 2018 to 2026
$7.3M
Medical Research Council MC_UU_00033/1Medical Research Council MR/K019708/1NIAID NIH HHS P30 AI036214NIAID NIH HHS R24 AI136618NIAID NIH HHS UM1 AI068634
6 · The paper itself

Abstract

• Human immunodeficiency virus (HIV) drug resistance has implications for antiretroviral treatment strategies and for containing the HIV pandemic because the development of HIV drug resistance leads to the requirement for antiretroviral drugs that may be less effective, less well-tolerated, and more expensive than those used in first-line regimens.  • HIV drug resistance studies are designed to determine which HIV mutations are selected by antiretroviral drugs and, in turn, how these mutations affect antiretroviral drug susceptibility and response to future antiretroviral treatment regimens.  • Such studies collectively form a vital knowledge base essential for monitoring global HIV drug resistance trends, interpreting HIV genotypic tests, and updating HIV treatment guidelines.  • Although HIV drug resistance data are collected in many studies, such data are often not publicly shared, prompting the need to recommend best practices to encourage and standardize HIV drug resistance data sharing.  • In contrast to other viruses, sharing HIV sequences from phylogenetic studies of transmission dynamics requires additional precautions as HIV transmission is criminalized in many countries and regions.  • Our recommendations are designed to ensure that the data that contribute to HIV drug resistance knowledge will be available without undue hardship to those publishing HIV drug resistance studies and without risk to people living with HIV.

Indexed as

Anti-HIV AgentsHIV-1HIV InfectionsAnti-Retroviral AgentsDrug Resistance, ViralHumansMutationPhylogenyAnti-HIV AgentsAnti-Retroviral Agents

Identifiers

PMID37738247
PMCPMC10558071
OpenAlexW4386953567

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.