Evidence map›Paper›PMID 37737493›Full record

ArticleEcology letters2023

Predicting the fine-scale spatial distribution of zoonotic reservoirs using computer vision.

Nathan C Layman, Andrew J Basinski, Boyu Zhang, Evan A Eskew, Brian H Bird, Bruno M Ghersi, James Bangura, Elisabeth Fichet-Calvet, Christopher H Remien, Mohamed Vandi and 2 more

Abstract read
In one paragraph

Article in Ecology letters, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed, 2 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 2 syntheses or guidelines pooled it.

  1. Pooled it
  2. Pooled it
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Nathan C LaymanEcoHealth Alliance, New York, New York, USA.ORCID https://orcid.org/0000-0003-2238-6584
Andrew J BasinskiInstitute for Interdisciplinary Data Sciences, University of Idaho, Moscow, Idaho, USA.
Boyu ZhangInstitute for Interdisciplinary Data Sciences, University of Idaho, Moscow, Idaho, USA.
Evan A EskewInstitute for Interdisciplinary Data Sciences, University of Idaho, Moscow, Idaho, USA.
Brian H BirdOne Health Institute, School of Veterinary Medicine, University of California-Davis, Davis, California, USA.
Bruno M GhersiOne Health Institute, School of Veterinary Medicine, University of California-Davis, Davis, California, USA.
James BanguraUniversity of Makeni and University of California, Davis One Health Program, Makeni, Sierra Leone.
Elisabeth Fichet-CalvetBernhard Nocht Institute for Tropical Medicine, Hamburg, Germany.
Christopher H RemienDepartment of Mathematics and Statistical Science, University of Idaho, Moscow, Idaho, USA.
Mohamed VandiMinistry of Health and Sanitation, Freetown, Sierra Leone.
Mohamed BahMinistry of Agriculture and Forestry, Freetown, Sierra Leone.
Scott L NuismerDepartment of Biological Sciences, University of Idaho, Moscow, Idaho, USA.ORCID https://orcid.org/0000-0001-9817-0056

Funding

COLLABORATIVE RESEARCH: A MATHEMATICAL THEORY OF TRANSMISSIBLE VACCINES R01GM122079 · NIGMS · UNIVERSITY OF IDAHO · PI SCOTT L NUISMER · 2016 to 2026
$2.2M
NIGMS NIH HHS R01 GM122079NIH HHS R01GM122079
6 · The paper itself

Abstract

Zoonotic diseases threaten human health worldwide and are often associated with anthropogenic disturbance. Predicting how disturbance influences spillover risk is critical for effective disease intervention but difficult to achieve at fine spatial scales. Here, we develop a method that learns the spatial distribution of a reservoir species from aerial imagery. Our approach uses neural networks to extract features of known or hypothesized importance from images. The spatial distribution of these features is then summarized and linked to spatially explicit reservoir presence/absence data using boosted regression trees. We demonstrate the utility of our method by applying it to the reservoir of Lassa virus, Mastomys natalensis, within the West African nations of Sierra Leone and Guinea. We show that, when trained using reservoir trapping data and publicly available aerial imagery, our framework learns relationships between environmental features and reservoir occurrence and accurately ranks areas according to the likelihood of reservoir presence.

Indexed as

Lassa FeverAnimalsDisease ReservoirsGuineaHumansLassa virusMurinaeZoonosesartificial intelligenceemerging infectious diseaseLassa virusspilloverzoonoses

Identifiers

PMID37737493
PMCPMC11298155

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.