Evidence map›Paper›PMID 37735923›Full record

ArticleMovement disorders : official journal of the Movement Disorder Society2023

Bidirectional Transcription at the PPP2R2B Gene Locus in Spinocerebellar Ataxia Type 12.

Chengqian Zhou, Hans B Liu, Fatemeh Jahanbakhsh, Leon Deng, Bin Wu, Mingyao Ying, Russell L Margolis, Pan P Li

Open access · greenAbstract read
In one paragraph

Article in Movement disorders : official journal of the Movement Disorder Society, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.3field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 9 citations in OpenAlex.

  1. Review
  2. Review
  3. Role of Bβ1 overexpression in the pathogenesis of SCA12.Movement disorders : official journal of the Movement Disorder Society · 2024
    Article
  4. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Chengqian ZhouDepartment of Psychiatry and Behavioral Sciences, Division of Neurobiology, Johns Hopkins University School of Medicine, Baltimore, Maryland, USA.
Hans B LiuDepartment of Psychiatry and Behavioral Sciences, Division of Neurobiology, Johns Hopkins University School of Medicine, Baltimore, Maryland, USA.
Fatemeh JahanbakhshDepartment of Biophysics and Biophysical Chemistry, Johns Hopkins University, Baltimore, Maryland, USA.
Leon DengDepartment of Psychiatry and Behavioral Sciences, Division of Neurobiology, Johns Hopkins University School of Medicine, Baltimore, Maryland, USA.
Bin WuDepartment of Biophysics and Biophysical Chemistry, Johns Hopkins University, Baltimore, Maryland, USA.
Mingyao YingDepartment of Neurology, Johns Hopkins University School of Medicine, Baltimore, Maryland, USA.
Russell L MargolisDepartment of Psychiatry and Behavioral Sciences, Division of Neurobiology, Johns Hopkins University School of Medicine, Baltimore, Maryland, USA.
Pan P LiDepartment of Psychiatry and Behavioral Sciences, Division of Neurobiology, Johns Hopkins University School of Medicine, Baltimore, Maryland, USA.ORCID 0000-0001-6084-6348
Johns Hopkins University · USKennedy Krieger Institute · US

Funding

Single molecule study of C9ORF72 repeat RNA metabolisms in ALS/FTDRF1NS113820 · NINDS · JOHNS HOPKINS UNIVERSITY · PI SUN, SHUYING, WU, BIN · 2020 to 2025
$6.2M
Molecular Pathogenesis of spinocerebellar ataxia type 12R01NS122756 · NINDS · JOHNS HOPKINS UNIVERSITY · PI Pan Li · 2023 to 2026
$1.9M
Developing optogenetic and chemogenetic approaches to control RNA metabolism in live cellsR01GM136897 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI WU, BIN · 2021 to 2024
$1.8M
Evaluation of the role of RNA toxicity in SCA2 pathogenesis using genome editing in patient iPSCsR21NS112796 · NINDS · JOHNS HOPKINS UNIVERSITY · PI ELLERBY, LISA M, LI, PAN · 2019 to 2019
$506k
Novel knock-in mouse models of spinocerebellar ataxia type 12R21NS112687 · NINDS · JOHNS HOPKINS UNIVERSITY · PI LI, PAN · 2020 to 2020
$450k
Spinocerebellar ataxia type 12 iPSCs and PP2A dysregulationR21NS093287 · NINDS · JOHNS HOPKINS UNIVERSITY · PI MARGOLIS, RUSSELL L · 2015 to 2016
$446k
NIGMS NIH HHS R01 GM136897NIH HHS GM136897NIH HHS NS093287NIH HHS NS112687NIH HHS NS112796NIH HHS NS113820NIH HHS NS122756NINDS NIH HHS R01 NS122756NINDS NIH HHS R21 NS093287NINDS NIH HHS R21 NS112687NINDS NIH HHS R21 NS112796NINDS NIH HHS RF1 NS113820
6 · The paper itself

Abstract

backgroundSpinocerebellar ataxia type 12 (SCA12) is a neurodegenerative disease caused by expansion of a CAG repeat in the PPP2R2B gene.

objectiveIn this study, we tested the hypothesis that the PPP2R2B antisense (PPP2R2B-AS1) transcript containing a CUG repeat is expressed and contributes to SCA12 pathogenesis.

methodsExpression of PPP2R2B-AS1 transcript was detected in SCA12 human induced pluripotent stem cells (iPSCs), iPSC-derived NGN2 neurons, and SCA12 knock-in mouse brains using strand-specific reverse transcription polymerase chain reaction. The tendency of expanded PPP2R2B-AS1 (expPPP2R2B-AS1) RNA to form foci, a marker of toxic processes involving mutant RNAs, was examined in SCA12 cell models by fluorescence in situ hybridization. The apoptotic effect of expPPP2R2B-AS1 transcripts on SK-N-MC neuroblastoma cells was evaluated by caspase 3/7 activity. Western blot was used to examine the expression of repeat associated non-ATG-initiated translation of expPPP2R2B-AS1 transcript in SK-N-MC cells.

resultsThe repeat region in the PPP2R2B gene locus is bidirectionally transcribed in SCA12 iPSCs, iPSC-derived NGN2 neurons, and SCA12 mouse brains. Transfected expPPP2R2B-AS1 transcripts induce apoptosis in SK-N-MC cells, and the apoptotic effect may be mediated, at least in part, by the RNA secondary structure. The expPPP2R2B-AS1 transcripts form CUG RNA foci in SK-N-MC cells. expPPP2R2B-AS1 transcript is translated in the alanine open reading frame (ORF) via repeat-associated non-ATG translation, which is diminished by single-nucleotide interruptions within the CUG repeat and MBNL1 overexpression.

conclusionsThese findings suggest that PPP2R2B-AS1 contributes to SCA12 pathogenesis and may therefore provide a novel therapeutic target for the disease. © 2023 International Parkinson and Movement Disorder Society.

Indexed as

Repetitive Sequences, Amino AcidSpinocerebellar AtaxiasTranscription, GeneticAnimalsApoptosisCell LineGene Knock-In TechniquesHumansInduced Pluripotent Stem CellsMiceNerve Tissue ProteinsNeuronsProtein Phosphatase 2RNA, AntisenseRNA-Binding ProteinsMBNL1 protein, humanNerve Tissue ProteinsPPP2R2B protein, humanProtein Phosphatase 2RNA, AntisenseRNA-Binding ProteinsantisenseSCA12

Identifiers

PMID37735923
PMCPMC10840700
OpenAlexW4386945272

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.