Evidence map›Paper›PMID 37735871›Full record

ArticleBiophysical journal2023

Utility of FRET in studies of membrane protein oligomerization: The concept of the effective dissociation constant.

Daniel M McKenzie, Daniel Wirth, Taras V Pogorelov, Kalina Hristova

Abstract read
In one paragraph

Article in Biophysical journal, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
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  3. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Daniel M McKenzieDepartment of Materials Science and Engineering, Johns Hopkins University, 3400 Charles Street, Baltimore, Maryland.
Daniel WirthDepartment of Materials Science and Engineering, Johns Hopkins University, 3400 Charles Street, Baltimore, Maryland.
Taras V PogorelovDepartment of Chemistry, Center for Biophysics and Quantitative Biology, School of Chemical Sciences, Beckman Institute for Advanced Science and Technology, University of Illinois at Urbana-Champaign, Urbana, Illinois.
Kalina HristovaDepartment of Materials Science and Engineering, Johns Hopkins University, 3400 Charles Street, Baltimore, Maryland. Electronic address: kh@jhu.edu.

Funding

Seeking the Physical Basis of AchondroplasiaR01GM068619 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI HRISTOVA, KALINA · 2004 to 2022
$5.4M
Capturing structure and dynamics of transmembrane signaling proteinsR01GM141298 · NIGMS · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI POGORELOV, TARAS V. · 2021 to 2024
$1.3M
NIGMS NIH HHS R01 GM068619NIGMS NIH HHS R01 GM141298
6 · The paper itself

Abstract

The activity of many membrane receptors is controlled through their lateral association into dimers or higher-order oligomers. Although Förster resonance energy transfer (FRET) measurements have been used extensively to characterize the stability of receptor dimers, the utility of FRET in studies of larger oligomers has been limited. Here we introduce an effective equilibrium dissociation constant that can be extracted from FRET measurements for EphA2, a receptor tyrosine kinase (RTK) known to form active oligomers of heterogeneous distributions in response to its ligand ephrinA1-Fc. The newly introduced effective equilibrium dissociation constant has a well-defined physical meaning and biological significance. It denotes the receptor concentration for which half of the receptors are monomeric and inactive, and the other half are associated into oligomers and are active, irrespective of the exact oligomer size. This work introduces a new dimension to the utility of FRET in studies of membrane receptor association and signaling in the plasma membrane.

Indexed as

Fluorescence Resonance Energy TransferSignal TransductionCell MembraneMembrane ProteinsMembranesMembrane Proteins

Identifiers

PMID37735871
PMCPMC10598290

What OpenQuestion holds

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.