Evidence map›Paper›PMID 37735591›Full record

ArticleNature immunology2023

Multimodal single-cell datasets characterize antigen-specific CD8

Bingjie Zhang, Rabi Upadhyay, Yuhan Hao, Marie I Samanovic, Ramin S Herati, John D Blair, Jordan Axelrad, Mark J Mulligan, Dan R Littman, Rahul Satija

Open access · hybridAbstract read
In one paragraph

Article in Nature immunology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
8.5field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 52 citations in OpenAlex.

  1. Immunophenotyping by Single-Cell CITE-Seq.Methods in molecular biology (Clifton, N.J.) · 2027
    Article
  2. Renaissance of antiviral CD8Nature reviews. Immunology · 2026
    Review
  3. Review
  4. Article
  5. Article
  6. Distinct CD8iScience · 2026
    Article
  7. Nonoxidative pentose phosphate pathway regulates CD8Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Characterization of human CMV-specific CD8Cell reports methods · 2025
    Article
  16. Recovering time-varying networks from single-cell data.Bioinformatics (Oxford, England) · 2025
    Article
  17. BNT162b2 COVID-19 vaccination elicits the expansion of CD16The Journal of allergy and clinical immunology · 2025
    Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 1 country.

Bingjie Zhang *New York Genome Center, New York, NY, USA.ORCID 0000-0002-0535-0371
Rabi Upadhyay *Department of Cell Biology, New York University Grossman School of Medicine, New York, NY, USA.ORCID 0000-0002-2154-0132
Yuhan HaoNew York Genome Center, New York, NY, USA.
Marie I SamanovicDepartment of Medicine, New York University Grossman School of Medicine, New York, NY, USA.
Ramin S HeratiDepartment of Medicine, New York University Grossman School of Medicine, New York, NY, USA.ORCID 0000-0003-2613-4050
John D BlairNew York Genome Center, New York, NY, USA.
Jordan AxelradDepartment of Medicine, New York University Grossman School of Medicine, New York, NY, USA.ORCID 0000-0003-1951-7790
Mark J MulliganDepartment of Medicine, New York University Grossman School of Medicine, New York, NY, USA.
Dan R LittmanDepartment of Cell Biology, New York University Grossman School of Medicine, New York, NY, USA. dan.littman@med.nyu.edu.ORCID 0000-0002-2850-8688
Rahul SatijaNew York Genome Center, New York, NY, USA. rsatija@nygenome.org.ORCID 0000-0001-9448-8833
New York Genome Center · USNYU Langone Health · USHoward Hughes Medical Institute · USNew York University · US

Funding

NIAID Centers of Excellence for Influenza Research and Response: Universal Influenza Vaccine Research Activities75N93021C00014 · NIAID · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI GARCIA-SASTRE, ADOLFO · 2021 to 2025
$62.6M
Virology CoreU19AI082630 · NIAID · MASSACHUSETTS GENERAL HOSPITAL · PI RAYMOND T CHUNG, GEORG Michael LAUER · 2009 to 2026
$48.1M
Establishment of the New York University Vaccine and Treatment Evaluation Unit (NYU VTEU) - DMID 21-0012UM1AI148574 · NIAID · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI Angelica Cifuentes Kottkamp, Anoma Nellore · 2020 to 2026
$23.9M
Center for Integrated Cellular Analysis - Valeria A. Sanchez EstradaRM1HG011014 · NHGRI · NEW YORK GENOME CENTER · PI LANDAU, DAN, SATIJA, RAHUL · 2020 to 2025
$22.1M
Comprehensive reference atlas construction, geolocation and data integration for HuBMAP HIVE [5 of 5]OT2OD033760 · OD · NEW YORK GENOME CENTER · PI SATIJA, RAHUL · 2022 to 2025
$6.1M
A systems immunology approach for predicting poor responses to Hepatitis B vaccinationR01AI158617 · NIAID · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI HERATI, RAMIN · 2021 to 2025
$3.9M
Determinants of induced Treg and inflammatory Th17 cell balance in response to potentially pathogenic microbiotaR01AI158687 · NIAID · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI Dan Littman · 2021 to 2026
$3.2M
Mechanism of microbiota-mediated potentiation of checkpoint blockade efficacy in lung cancerR01CA255635 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI LITTMAN, DAN · 2021 to 2025
$2.8M
Role of PKCDelta in B cell signaling and selectionR01AI050867 · NIAID · ROCKEFELLER UNIVERSITY · PI TARAKHOVSKY, ALEXANDER · 2002 to 2006
$2.1M
Howard Hughes Medical InstituteNCI NIH HHS R01 CA255635NHGRI NIH HHS RM1 HG011014NIAID NIH HHS 75N93021C00014NIAID NIH HHS R01 AI050867NIAID NIH HHS R01 AI158617NIAID NIH HHS U19 AI082630NIAID NIH HHS UM1 AI148574NIH HHS OT2 OD033760
6 · The paper itself

Abstract

The immune response to SARS-CoV-2 antigen after infection or vaccination is defined by the durable production of antibodies and T cells. Population-based monitoring typically focuses on antibody titer, but there is a need for improved characterization and quantification of T cell responses. Here, we used multimodal sequencing technologies to perform a longitudinal analysis of circulating human leukocytes collected before and after immunization with the mRNA vaccine BNT162b2. Our data indicated distinct subpopulations of CD8

Indexed as

CD8-Positive T-LymphocytesCOVID-19Antibodies, ViralBNT162 VaccineCOVID-19 VaccinesHumansSARS-CoV-2VaccinationAntibodies, ViralBNT162 VaccineCOVID-19 Vaccines

Identifiers

PMID37735591
PMCPMC10522491
OpenAlexW4386923904

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.