Evidence map›Paper›PMID 37735470›Full record

ArticleEvoDevo2023

Nematostella vectensis exemplifies the exceptional expansion and diversity of opsins in the eyeless Hexacorallia.

Kyle J McCulloch, Leslie S Babonis, Alicia Liu, Christina M Daly, Mark Q Martindale, Kristen M Koenig

Open access · goldAbstract read
In one paragraph

Article in EvoDevo, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
4.5field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 29 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. An Ocean of Opsins.Genome biology and evolution · 2025
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Larval swimming in the sea anemoneEcology and evolution · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 5 institutions in 1 country.

Kyle J McCullochDepartment of Ecology, Evolution and Behavior, University of Minnesota, St. Paul, MN, 55108, USA.
Leslie S BabonisDepartment of Ecology and Evolutionary Biology, Cornell University, Ithaca, NY, 14853, USA.
Alicia LiuJohn Harvard Distinguished Science Fellowship Program, Harvard University, Cambridge, MA , 02138, , USA.
Christina M DalyJohn Harvard Distinguished Science Fellowship Program, Harvard University, Cambridge, MA , 02138, , USA.
Mark Q MartindaleWhitney Lab for Marine Bioscience, University of Florida, St. Augustine, FL, 32080, USA.
Kristen M KoenigJohn Harvard Distinguished Science Fellowship Program, Harvard University, Cambridge, MA , 02138, , USA. kmkoenig@utexas.edu.
Harvard University · USCornell University · USHarvard University Press · USUniversity of Florida · USUniversity of Minnesota · US

Funding

Investigating Organ Formation and the Emergence of Complexity in the Visual System Using Comparative Developmental ApproachesDP5OD023111 · OD · HARVARD UNIVERSITY · PI KOENIG, KRISTEN MARIE · 2016 to 2020
$2.1M
NASA NNX14AG70GNIH HHS DP5 OD023111
6 · The paper itself

Abstract

backgroundOpsins are the primary proteins responsible for light detection in animals. Cnidarians (jellyfish, sea anemones, corals) have diverse visual systems that have evolved in parallel with bilaterians (squid, flies, fish) for hundreds of millions of years. Medusozoans (e.g., jellyfish, hydroids) have evolved eyes multiple times, each time independently incorporating distinct opsin orthologs. Anthozoans (e.g., corals, sea anemones,) have diverse light-mediated behaviors and, despite being eyeless, exhibit more extensive opsin duplications than medusozoans. To better understand the evolution of photosensitivity in animals without eyes, we increased anthozoan representation in the phylogeny of animal opsins and investigated the large but poorly characterized opsin family in the sea anemone Nematostella vectensis.

resultsWe analyzed genomic and transcriptomic data from 16 species of cnidarians to generate a large opsin phylogeny (708 sequences) with the largest sampling of anthozoan sequences to date. We identified 29 opsins from N. vectensis (NvOpsins) with high confidence, using transcriptomic and genomic datasets. We found that lineage-specific opsin duplications are common across Cnidaria, with anthozoan lineages exhibiting among the highest numbers of opsins in animals. To establish putative photosensory function of NvOpsins, we identified canonically conserved protein domains and amino acid sequences essential for opsin function in other animal species. We show high sequence diversity among NvOpsins at sites important for photoreception and transduction, suggesting potentially diverse functions. We further examined the spatiotemporal expression of NvOpsins and found both dynamic expression of opsins during embryonic development and sexually dimorphic opsin expression in adults.

conclusionsThese data show that lineage-specific duplication and divergence has led to expansive diversity of opsins in eyeless cnidarians, suggesting opsins from these animals may exhibit novel biochemical functions. The variable expression patterns of opsins in N. vectensis suggest opsin gene duplications allowed for a radiation of unique sensory cell types with tissue- and stage-specific functions. This diffuse network of distinct sensory cell types could be an adaptive solution for varied sensory tasks experienced in distinct life history stages in Anthozoans.

Indexed as

AnthozoaCnidariaHexacoralliaNematostellaOpsinPhotoreceptorRhodopsinSea anemone

Identifiers

PMID37735470
PMCPMC10512536
OpenAlexW4386934385

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.