Evidence map›Paper›PMID 37733586›Full record

ArticleCell reports2023

Structural basis for translation inhibition by MERS-CoV Nsp1 reveals a conserved mechanism for betacoronaviruses.

Swapnil C Devarkar, Michael Vetick, Shravani Balaji, Ivan B Lomakin, Luojia Yang, Danni Jin, Wendy V Gilbert, Sidi Chen, Yong Xiong

Open access · goldAbstract read
In one paragraph

Article in Cell reports, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
2.3field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. SARS-CoV2 Nsp1 is a metal-dependent DNA and RNA endonuclease.Biometals : an international journal on the role of metal ions in biology, biochemistry, and medicine · 2024
    Article
  7. Review
  8. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Swapnil C DevarkarDepartment of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT 06511, USA.
Michael VetickDepartment of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT 06511, USA.
Shravani BalajiDepartment of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT 06511, USA.
Ivan B LomakinDepartment of Dermatology, Yale University School of Medicine, New Haven, CT 06520, USA.
Luojia YangSystems Biology Institute, Yale University, West Haven, CT 06516, USA; Department of Genetics, Yale University School of Medicine, New Haven, CT 06520, USA.
Danni JinDepartment of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT 06511, USA.
Wendy V GilbertDepartment of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT 06511, USA.
Sidi ChenSystems Biology Institute, Yale University, West Haven, CT 06516, USA; Department of Genetics, Yale University School of Medicine, New Haven, CT 06520, USA.
Yong XiongDepartment of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT 06511, USA. Electronic address: yong.xiong@yale.edu.
Yale University · US

Funding

MEDICAL SCIENTIST TRAINING PROGRAMT32GM007205 · NIGMS · YALE UNIVERSITY · PI KAZMIERCZAK, BARBARA I · 1985 to 2019
$42.9M
Medical Scientist Training ProgramT32GM136651 · NIGMS · YALE UNIVERSITY · PI BARBARA I KAZMIERCZAK · 2020 to 2026
$16.5M
Translational Control by 5'-untranslated regionsR01GM132358 · NIGMS · YALE UNIVERSITY · PI GILBERT, WENDY VICTORIA · 2019 to 2022
$1.4M
NIGMS NIH HHS R01 GM132358NIGMS NIH HHS T32 GM007205NIGMS NIH HHS T32 GM136651
6 · The paper itself

Abstract

All betacoronaviruses (β-CoVs) encode non-structural protein 1 (Nsp1), an essential pathogenicity factor that potently restricts host gene expression. Among the β-CoV family, MERS-CoV is the most distantly related member to SARS-CoV-2, and the mechanism for host translation inhibition by MERS-CoV Nsp1 remains controversial. Herein, we show that MERS-CoV Nsp1 directly interacts with the 40S ribosomal subunit. Using cryogenic electron microscopy (cryo-EM), we report a 2.6-Å structure of the MERS-CoV Nsp1 bound to the human 40S ribosomal subunit. The extensive interactions between C-terminal domain of MERS-CoV Nsp1 and the mRNA entry channel of the 40S ribosomal subunit are critical for its translation inhibition function. This mechanism of MERS-CoV Nsp1 is strikingly similar to SARS-CoV and SARS-CoV-2 Nsp1, despite modest sequence conservation. Our results reveal that the mechanism of host translation inhibition is conserved across β-CoVs and highlight a potential therapeutic target for the development of antivirals that broadly restrict β-CoVs.

Indexed as

Middle East Respiratory Syndrome CoronavirusSevere acute respiratory syndrome-related coronavirusHumansRNA, MessengerSARS-CoV-2Viral Nonstructural ProteinsRNA, MessengerViral Nonstructural Proteins40S ribosomebetacoronavirusCP: Molecular biologycryo-EMMERS-CoVmRNA entry channelNsp1SARS-CoVSARS-CoV-2structuretranslation inhibition

Identifiers

PMID37733586
PMCPMC12447786
OpenAlexW4386854092

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.