Evidence map›Paper›PMID 37732557›Full record

ArticleThe Journal of chemical physics2023

Angle-dependent integral equation theory improves results of thermodynamics and structure of rose water model.

Peter Ogrin, Tomaz Urbic

Abstract read
In one paragraph

Article in The Journal of chemical physics, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Peter OgrinFaculty of Chemistry and Chemical Technology, University of Ljubljana, Vecna Pot 113, SI-1000 Ljubljana, Slovenia.ORCID 0000-0001-9699-588X
Tomaz UrbicFaculty of Chemistry and Chemical Technology, University of Ljubljana, Vecna Pot 113, SI-1000 Ljubljana, Slovenia.ORCID 0000-0001-6440-0220

Funding

Solvation modeling for next-gen biomolecule simulationsRM1GM135136 · NIGMS · STATE UNIVERSITY NEW YORK STONY BROOK · PI COUTSIAS, EVANGELOS A., DILL, KEN A · 2020 to 2024
$6.0M
NIGMS NIH HHS RM1 GM135136
6 · The paper itself

Abstract

Orientation-dependent integral equation theory (ODIET) was applied to the rose water model. Structural and thermodynamic properties of water modeled with the rose model were calculated using ODIET and compared to results from orientation-averaged integral equation theory (IET) and Monte Carlo simulations. Rose water model is a simple two-dimensional water model where molecules of water are represented as Lennard-Jones disks with explicit hydrogen bonding potential in form of rose functions. Orientational dependency significantly improves IET, as the thermodynamic results obtained using ODIET are significantly more in agreement with results calculated using MC than in the case of the orientationally averaged version. At high temperatures, the agreement between the simulation and theory is quantitative; however, when temperatures lower, a slight deviation between results obtained with different methods appear. ODIET correctly predicts the radial distribution function; moreover, ODIet also enables the calculation of angular distributions. While the angular distributions obtained with ODIET are in qualitative agreement with distributions from MC simulations, the height of the peaks in angular distributions differs between methods. Using results from ODIET, the spatial distribution of water molecules was constructed, which aids in the interpretation of other structural properties. ODIET was also used to calculate fractions of molecules with different number of hydrogen bonds, which is in the agreement with the simulations. Overall, use of ODIET significantly improves the obtained results in comparison to standard IET.

Identifiers

PMID37732557
PMCPMC10908565

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