Evidence map›Paper›PMID 37730727›Full record

ArticleParasites & vectors2023

First isolation of Rickettsia amblyommatis from Amblyomma mixtum in Colombia.

Jenny J Chaparro-Gutiérrez, Leidy Y Acevedo-Gutiérrez, Nicole L Mendell, Laura N Robayo-Sánchez, Arlex Rodríguez-Durán, Jesús A Cortés-Vecino, Diana Fernández, Alejandro Ramírez-Hernández, Donald H Bouyer

Open access · goldAbstract read
In one paragraph

Article in Parasites & vectors, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
2.2field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 8 citations in OpenAlex.

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  6. Spotted Fever GroupInsects · 2024
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Jenny J Chaparro-GutiérrezResearch Group CIBAV, University of Antioquia, UdeA, Medellín, Colombia.
Leidy Y Acevedo-GutiérrezDepartment of Agricultural Sciences, Faculty of Veterinary Medicine, Lasallian University Corporation (Unilasallista), GIVET Research Group, Caldas, Antioquia, Colombia.
Nicole L MendellDepartment of Pathology, University of Texas Medical Branch, 301 University Boulevard, Galveston, TX, 77550, USA.
Laura N Robayo-SánchezResearch Group Veterinary Parasitology, Laboratorio de Parasitología Veterinaria, Universidad Nacional de Colombia, UNAL, Bogotá, Colombia.
Arlex Rodríguez-DuránResearch Group Veterinary Parasitology, Laboratorio de Parasitología Veterinaria, Universidad Nacional de Colombia, UNAL, Bogotá, Colombia.
Jesús A Cortés-VecinoResearch Group Veterinary Parasitology, Laboratorio de Parasitología Veterinaria, Universidad Nacional de Colombia, UNAL, Bogotá, Colombia.
Diana FernándezDepartment of Pathology, University of Texas Medical Branch, 301 University Boulevard, Galveston, TX, 77550, USA.
Alejandro Ramírez-HernándezDepartment of Pathology, University of Texas Medical Branch, 301 University Boulevard, Galveston, TX, 77550, USA.
Donald H BouyerDepartment of Pathology, University of Texas Medical Branch, 301 University Boulevard, Galveston, TX, 77550, USA. dobouyer@utmb.edu.
The University of Texas Medical Branch at Galveston · USUniversidad Nacional de Colombia · COUniversidad de Antioquia · CO

Funding

Research Training Program on the Impact of Zoonotic and Vector-borne Viruses, Rickettsiae, and Leptospira in Acute Undifferentiated Febrile IllnessesD43TW010331 · FIC · UNIVERSITY OF TEXAS MED BR GALVESTON · PI AGUILAR, PATRICIA VERONICA, RODAS, JUAN DAVID · 2016 to 2025
$2.6M
FIC NIH HHS D43 TW010331
6 · The paper itself

Abstract

backgroundRickettsiae are obligate intracellular Gram-negative bacteria that are the causative agent of rickettsioses and are spread to vertebrate hosts by arthropods. There are no previous reports of isolation of Rickettsia amblyommatis for Colombia.

methodsA convenience sampling was executed in three departments in Colombia for direct collection of adult ticks on domestic animals or over vegetation. Ticks were screened for the presence of Rickettsia spp. by real-time polymerase chain reaction (qPCR) amplifying the citrate synthase gene (gltA), and the positive sample was processed for isolation and further molecular characterization by conventional PCR. The absolute and relative frequencies were calculated for several tick species variables. All products from conventional PCR were further purified and sequenced by the Sanger technique. Representative sequences of 18 Rickettsia species were downloaded from GenBank. Consensus phylogenetic trees were constructed for the gltA, ompB, ompA, and htrA genes with 1000 replicates, calculating bootstrap values through the maximum likelihood method and the generalized time reversible substitution model in the MEGA 7.0 software program.

resultsOne female Amblyomma mixtum collected on vegetation was amplified by qPCR (gltA), indicating a frequency of 1.6% (1/61) for Rickettsia spp. INFECTION: Sequence analysis of a rickettsial isolate from this tick in BLASTn showed 100% identity with gltA (340 base pairs [bp]), 99.87% for ompB (782 bp), 98.99% for htrA (497 bp), and 100% for ompA (488 bp) to R. amblyommatis. Concatenated phylogenetic analysis confirmed these findings indicating that the isolate is grouped with other sequences of Amblyomma cajennense complex from Panama and Brazil within the R. amblyommatis clade.

conclusionsThis paper describes the isolation and early molecular identification of a R. amblyommatis strain from A. mixtum in Colombia.

Indexed as

AmblyommaRickettsiaAnimalsColombiaPhylogenyReal-Time Polymerase Chain ReactionArthropodsColombiaDiseaseRickettsiaTicks

Identifiers

PMID37730727
PMCPMC10510177
OpenAlexW4386890592

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.