Evidence map›Paper›PMID 37730711›Full record

ArticleNature communications2023

Custom tuning of Rieske oxygenase reactivity.

Jiayi Tian, Jianxin Liu, Madison Knapp, Patrick H Donnan, David G Boggs, Jennifer Bridwell-Rabb

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.6field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 16 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Jiayi TianDepartment of Chemistry, University of Michigan, Ann Arbor, MI, 48109, USA.ORCID http://orcid.org/0000-0002-6434-5759
Jianxin LiuDepartment of Chemistry, University of Michigan, Ann Arbor, MI, 48109, USA.ORCID http://orcid.org/0000-0001-5713-434X
Madison KnappDepartment of Chemistry, University of Michigan, Ann Arbor, MI, 48109, USA.ORCID http://orcid.org/0000-0002-5392-2282
Patrick H DonnanDepartment of Chemistry, University of Michigan, Ann Arbor, MI, 48109, USA.ORCID http://orcid.org/0000-0002-8076-2683
David G BoggsDepartment of Chemistry, University of Michigan, Ann Arbor, MI, 48109, USA.ORCID http://orcid.org/0000-0003-2946-9307
Jennifer Bridwell-RabbDepartment of Chemistry, University of Michigan, Ann Arbor, MI, 48109, USA. jebridwe@umich.edu.ORCID http://orcid.org/0000-0002-7437-6217
University of Michigan · US

Funding

One, Two, and Three Rieske Routes for Catalyzing Site-Specific Oxygenations: Equipment SupplementR35GM138271 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Jennifer D Bridwell-Rabb · 2020 to 2026
$2.4M
NIGMS NIH HHS R35 GM138271
6 · The paper itself

Abstract

Rieske oxygenases use a Rieske-type [2Fe-2S] cluster and a mononuclear iron center to initiate a range of chemical transformations. However, few details exist regarding how this catalytic scaffold can be predictively tuned to catalyze divergent reactions. Therefore, in this work, using a combination of structural analyses, as well as substrate and rational protein-based engineering campaigns, we elucidate the architectural trends that govern catalytic outcome in the Rieske monooxygenase TsaM. We identify structural features that permit a substrate to be functionalized by TsaM and pinpoint active-site residues that can be targeted to manipulate reactivity. Exploiting these findings allowed for custom tuning of TsaM reactivity: substrates are identified that support divergent TsaM-catalyzed reactions and variants are created that exclusively catalyze dioxygenation or sequential monooxygenation chemistry. Importantly, we further leverage these trends to tune the reactivity of additional monooxygenase and dioxygenase enzymes, and thereby provide strategies to custom tune Rieske oxygenase reaction outcomes.

Indexed as

DioxygenasesOxygenasesCatalysisCultureMixed Function OxygenasesDioxygenasesMixed Function OxygenasesOxygenases

Identifiers

PMID37730711
PMCPMC10511449
OpenAlexW4386883010

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.