Evidence map›Paper›PMID 37730643›Full record

ArticleGenome biology2023

Dosage compensation of Z sex chromosome genes in avian fibroblast cells.

Ruslan Deviatiiarov, Hiroki Nagai, Galym Ismagulov, Anastasia Stupina, Kazuhiro Wada, Shinji Ide, Noriyuki Toji, Heng Zhang, Woranop Sukparangsi, Sittipon Intarapat and 2 more

Open access · goldAbstract read
In one paragraph

Article in Genome biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
3.1field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 10 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 6 institutions in 4 countries.

Ruslan Deviatiiarov *International Research Center for Medical Sciences, Kumamoto University, Kumamoto, Japan.
Hiroki Nagai *International Research Center for Medical Sciences, Kumamoto University, Kumamoto, Japan.
Galym IsmagulovInternational Research Center for Medical Sciences, Kumamoto University, Kumamoto, Japan.
Anastasia StupinaRegulatory Genomics Research Center, Institute of Fundamental Medicine and Biology, Kazan Federal University, Kazan, Russian Federation.
Kazuhiro WadaDepartment of Biological Sciences, Faculty of Science, Hokkaido University, Sapporo, Japan.
Shinji IdeKumamoto City Zoo and Botanical Garden, Kumamoto, Japan.
Noriyuki TojiDepartment of Biological Sciences, Faculty of Science, Hokkaido University, Sapporo, Japan.
Heng ZhangGraduate School of Life Science, Hokkaido University, Sapporo, Japan.
Woranop SukparangsiDepartment of Biology, Faculty of Science, Burapha University, Chonburi, Thailand.
Sittipon IntarapatFaculty of Science, Mahidol University, Bangkok, Thailand.
Oleg GusevRegulatory Genomics Research Center, Institute of Fundamental Medicine and Biology, Kazan Federal University, Kazan, Russian Federation. o.gusev.fo@juntendo.ac.jp.
Guojun ShengInternational Research Center for Medical Sciences, Kumamoto University, Kumamoto, Japan. sheng@kumamoto-u.ac.jp.ORCID http://orcid.org/0000-0001-6759-3785
Hokkaido University · JPKazan Federal University · RUKumamoto University · JPBurapha University · THKumamoto City Hospital · JPMahidol University · TH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In birds, sex is genetically determined; however, the molecular mechanism is not well-understood. The avian Z sex chromosome (chrZ) lacks whole chromosome inactivation, in contrast to the mammalian chrX. To investigate chrZ dosage compensation and its role in sex specification, we use a highly quantitative method and analyze transcriptional activities of male and female fibroblast cells from seven bird species. Our data indicate that three fourths of chrZ genes are strictly compensated across Aves, similar to mammalian chrX. We also present a complete list of non-compensated chrZ genes and identify Ribosomal Protein S6 (RPS6) as a conserved sex-dimorphic gene in birds.

Indexed as

Epigenesis, GeneticSex ChromosomesAnimalsBirdsFemaleFibroblastsMaleMammalsBirdsCAGE (cap analysis of gene expression)CASI (cell autonomous sex identity)Dosage compensationFibroblastRPS6 (ribosomal protein S6)Sex chromosomeSex determinationTSS (transcription start site)

Identifiers

PMID37730643
PMCPMC10510239
OpenAlexW4386890541

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.