Evidence map›Paper›PMID 37729611›Full record

ArticleBlood2024

Integrated epigenetic and transcriptional single-cell analysis of t(11;14) multiple myeloma and its BCL2 dependency.

Noémie Leblay, Sungwoo Ahn, Rémi Tilmont, Mansour Poorebrahim, Ranjan Maity, Holly Lee, Elie Barakat, Jean-Baptiste Alberge, Sarthak Sinha, Arzina Jaffer and 4 more

Open access · hybridAbstract read
In one paragraph

Article in Blood, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
8.1field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 28 citations in OpenAlex.

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  16. Recent Advances in The Definition of the Molecular Alterations Occurring in Multiple Myeloma.Mediterranean journal of hematology and infectious diseases · 2024
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

14 authors at 3 institutions in 2 countries.

Noémie LeblayArnie Charbonneau Cancer Institute, University of Calgary, Calgary, AB, Canada.ORCID 0000-0002-4202-7127
Sungwoo AhnArnie Charbonneau Cancer Institute, University of Calgary, Calgary, AB, Canada.ORCID 0000-0002-7688-6843
Rémi TilmontArnie Charbonneau Cancer Institute, University of Calgary, Calgary, AB, Canada.ORCID 0000-0003-1739-2162
Mansour PoorebrahimArnie Charbonneau Cancer Institute, University of Calgary, Calgary, AB, Canada.
Ranjan MaityArnie Charbonneau Cancer Institute, University of Calgary, Calgary, AB, Canada.
Holly LeeArnie Charbonneau Cancer Institute, University of Calgary, Calgary, AB, Canada.
Elie BarakatArnie Charbonneau Cancer Institute, University of Calgary, Calgary, AB, Canada.
Jean-Baptiste AlbergeDana-Farber Cancer Institute, Boston, MA.ORCID 0000-0002-4218-7294
Sarthak SinhaDepartment of Comparative Biology and Experimental Medicine, Faculty of Veterinary Medicine, University of Calgary, Calgary, AB, Canada.ORCID 0000-0002-0770-3150
Arzina JafferDepartment of Comparative Biology and Experimental Medicine, Faculty of Veterinary Medicine, University of Calgary, Calgary, AB, Canada.ORCID 0000-0002-9197-9060
Benjamin G BarwickDepartment of Hematology and Medical Oncology, Emory University School of Medicine, Atlanta, GA.ORCID 0000-0001-9810-3566
Lawrence H BoiseDepartment of Hematology and Medical Oncology, Emory University School of Medicine, Atlanta, GA.ORCID 0000-0001-9436-8815
Nizar BahlisArnie Charbonneau Cancer Institute, University of Calgary, Calgary, AB, Canada.ORCID 0000-0001-7353-7034
Paola NeriArnie Charbonneau Cancer Institute, University of Calgary, Calgary, AB, Canada.ORCID 0000-0002-2595-3647
University of Calgary · CAEmory University · USDana-Farber Cancer Institute · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

abstractThe translocation t(11;14) occurs in 20% of patients with multiple myeloma (MM) and results in the upregulation of CCND1. Nearly two-thirds of t(11;14) MM cells are BCL2 primed and highly responsive to the oral BCL2 inhibitor venetoclax. Although it is evident that this unique sensitivity to venetoclax depends on the Bcl-2 homology domain 3- proapoptotic protein priming of BCL2, the biology underlying t(11;14) MM dependency on BCL2 is poorly defined. Importantly, the epigenetic regulation of t(11;14) transcriptomes and its impact on gene regulation and clinical response to venetoclax remain elusive. In this study, by integrating assay for transposase-accessible chromatin by sequencing (ATAC-seq) and RNA-seq at the single-cell level in primary MM samples, we have defined the epigenetic regulome and transcriptome associated with t(11;14) MM. A B-cell-like epigenetic signature was enriched in t(11;14) MM, confirming its phylogeny link to B-cell rather than plasma cell biology. Of note, a loss of a B-cell-like epigenetic signature with a gain of canonical plasma cell transcription factors was observed at the time of resistance to venetoclax. In addition, MCL1 and BCL2L1 copy number gains and structural rearrangements were linked to venetoclax resistance in patients with t(11;14) MM. To date, this is the first study in which both single-cell (sc) ATAC-seq and scRNA-seq analysis are integrated into primary MM cells to obtain a deeper resolution of the epigenetic regulome and transcriptome associated with t(11;14) MM biology and venetoclax resistance.

Indexed as

Antineoplastic AgentsMultiple MyelomaBridged Bicyclo Compounds, HeterocyclicEpigenesis, GeneticHumansProto-Oncogene Proteins c-bcl-2SulfonamidesAntineoplastic AgentsBCL2 protein, humanBridged Bicyclo Compounds, HeterocyclicProto-Oncogene Proteins c-bcl-2Sulfonamidesvenetoclax

Identifiers

PMID37729611
PMCPMC10797556
OpenAlexW4386884209

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.