Evidence map›Paper›PMID 37729426›Full record

ArticleCancer research2023

Genome-Wide CRISPR Screens Identify Multiple Synthetic Lethal Targets That Enhance KRASG12C Inhibitor Efficacy.

Suman Mukhopadhyay, Hsin-Yi Huang, Ziyan Lin, Michela Ranieri, Shuai Li, Soumyadip Sahu, Yingzhuo Liu, Yi Ban, Kayla Guidry, Hai Hu and 16 more

Open access · greenAbstract read
In one paragraph

Article in Cancer research, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 86 papers.

0numbers the graph read from it
0cells of the map it votes in
86citing papers in PubMed
20.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

86 citing papers in PubMed, 99 citations in OpenAlex.

  1. Trial
  2. Review
  3. Article
  4. Review
  5. Review
  6. Review
  7. Article
  8. Article
  9. Article
  10. Review
  11. CircPRKCA Promotes NSCLC Progression via miR-200b-3p/FRMD6/SNAI2 Axis.International journal of molecular sciences · 2026
    Article
  12. Current oncology (Toronto, Ont.) · 2026
    Review
  13. Review
  14. Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Review
  20. Article

26 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

26 authors at 5 institutions in 1 country.

Suman Mukhopadhyay *Laura and Isaac Perlmutter Cancer Center, NYU Grossman School of Medicine, NYU Langone Health, New York, New York.ORCID 0000-0002-4658-1942
Hsin-Yi Huang *Laura and Isaac Perlmutter Cancer Center, NYU Grossman School of Medicine, NYU Langone Health, New York, New York.ORCID 0000-0003-1217-4131
Ziyan LinApplied Bioinformatics Laboratories, Office of Science and Research, New York University Grossman School of Medicine, New York, New York.ORCID 0000-0002-4170-7278
Michela RanieriLaura and Isaac Perlmutter Cancer Center, NYU Grossman School of Medicine, NYU Langone Health, New York, New York.ORCID 0000-0002-3833-3594
Shuai LiLaura and Isaac Perlmutter Cancer Center, NYU Grossman School of Medicine, NYU Langone Health, New York, New York.ORCID 0009-0000-9401-3977
Soumyadip SahuLaura and Isaac Perlmutter Cancer Center, NYU Grossman School of Medicine, NYU Langone Health, New York, New York.ORCID 0000-0002-2497-864X
Yingzhuo LiuLaura and Isaac Perlmutter Cancer Center, NYU Grossman School of Medicine, NYU Langone Health, New York, New York.ORCID 0009-0007-6120-8023
Yi BanLaura and Isaac Perlmutter Cancer Center, NYU Grossman School of Medicine, NYU Langone Health, New York, New York.ORCID 0000-0002-7644-9686
Kayla GuidryLaura and Isaac Perlmutter Cancer Center, NYU Grossman School of Medicine, NYU Langone Health, New York, New York.ORCID 0000-0001-8190-0278
Hai HuLaura and Isaac Perlmutter Cancer Center, NYU Grossman School of Medicine, NYU Langone Health, New York, New York.ORCID 0000-0002-6985-8959
Alfonso LopezLaura and Isaac Perlmutter Cancer Center, NYU Grossman School of Medicine, NYU Langone Health, New York, New York.ORCID 0009-0007-2479-8538
Fiona ShermanLaura and Isaac Perlmutter Cancer Center, NYU Grossman School of Medicine, NYU Langone Health, New York, New York.ORCID 0009-0000-3846-6111
Yi Jer TanLaura and Isaac Perlmutter Cancer Center, NYU Grossman School of Medicine, NYU Langone Health, New York, New York.ORCID 0000-0003-2145-2105
Yeuan Ting LeeLaura and Isaac Perlmutter Cancer Center, NYU Grossman School of Medicine, NYU Langone Health, New York, New York.ORCID 0000-0001-9356-5681
Amanda P ArmstrongLaura and Isaac Perlmutter Cancer Center, NYU Grossman School of Medicine, NYU Langone Health, New York, New York.ORCID 0009-0000-0592-1966
Igor DolgalevLaura and Isaac Perlmutter Cancer Center, NYU Grossman School of Medicine, NYU Langone Health, New York, New York.ORCID 0000-0003-4451-126X
Priyanka SahuLaura and Isaac Perlmutter Cancer Center, NYU Grossman School of Medicine, NYU Langone Health, New York, New York.ORCID 0009-0006-4633-5078
Tinghu ZhangDepartment of Chemical and Systems Biology, ChEM-H, Stanford Cancer Institute, School of Medicine, Stanford University, California.ORCID 0000-0003-1028-8020
Wenchao LuDepartment of Chemical and Systems Biology, ChEM-H, Stanford Cancer Institute, School of Medicine, Stanford University, California.ORCID 0000-0003-1175-365X
Nathanael S GrayDepartment of Chemical and Systems Biology, ChEM-H, Stanford Cancer Institute, School of Medicine, Stanford University, California.ORCID 0000-0001-5354-7403
James G ChristensenMirati Therapeutics, Inc., San Diego, California.ORCID 0000-0003-1835-0335
Tracy T TangVivace Therapeutics, Inc., San Mateo, California.ORCID 0000-0003-3425-4263
Vamsidhar VelchetiLaura and Isaac Perlmutter Cancer Center, NYU Grossman School of Medicine, NYU Langone Health, New York, New York.ORCID 0000-0002-6589-0759
Alireza Khodadadi-JamayranApplied Bioinformatics Laboratories, Office of Science and Research, New York University Grossman School of Medicine, New York, New York.ORCID 0000-0003-2495-7504
Kwok-Kin WongLaura and Isaac Perlmutter Cancer Center, NYU Grossman School of Medicine, NYU Langone Health, New York, New York.ORCID 0000-0001-6323-235X
Benjamin G NeelLaura and Isaac Perlmutter Cancer Center, NYU Grossman School of Medicine, NYU Langone Health, New York, New York.ORCID 0000-0002-9589-585X
NYU Langone Health · USStanford University · USNew York University · USMateon Therapeutics (United States) · USMirati Therapeutics (United States) · US

Funding

Vaccine FacilityP30CA016087 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI MARK Reid PHILIPS · 1985 to 2026
$83.1M
TR&D 4: Revealing Microstructure: Biophysical modeling and validation for discovery and clinical careP41EB017183 · NIBIB · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI Daniel K Sodickson · 2014 to 2026
$19.3M
Response and resistance to SHP2 inhibitors alone and in combination in Non-Small Cell Lung CancerR01CA248896 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI NEEL, BENJAMIN G., WONG, KWOK KIN · 2021 to 2025
$3.4M
NCI NIH HHS P30 CA016087NCI NIH HHS R01 CA248896NIBIB NIH HHS P41 EB017183
6 · The paper itself

Abstract

Non-small lung cancers (NSCLC) frequently (∼30%) harbor KRAS driver mutations, half of which are KRASG12C. KRAS-mutant NSCLC with comutated STK11 and/or KEAP1 is particularly refractory to conventional, targeted, and immune therapy. Development of KRASG12C inhibitors (G12Ci) provided a major therapeutic advance, but resistance still limits their efficacy. To identify genes whose deletion augments efficacy of the G12Cis adagrasib (MRTX-849) or adagrasib plus TNO155 (SHP2i), we performed genome-wide CRISPR/Cas9 screens on KRAS/STK11-mutant NSCLC lines. Recurrent, potentially targetable, synthetic lethal (SL) genes were identified, including serine-threonine kinases, tRNA-modifying and proteoglycan synthesis enzymes, and YAP/TAZ/TEAD pathway components. Several SL genes were confirmed by siRNA/shRNA experiments, and the YAP/TAZ/TEAD pathway was extensively validated in vitro and in mice. Mechanistic studies showed that G12Ci treatment induced gene expression of RHO paralogs and activators, increased RHOA activation, and evoked ROCK-dependent nuclear translocation of YAP. Mice and patients with acquired G12Ci- or G12Ci/SHP2i-resistant tumors showed strong overlap with SL pathways, arguing for the relevance of the screen results. These findings provide a landscape of potential targets for future combination strategies, some of which can be tested rapidly in the clinic. SIGNIFICANCE: Identification of synthetic lethal genes with KRASG12C using genome-wide CRISPR/Cas9 screening and credentialing of the ability of TEAD inhibition to enhance KRASG12C efficacy provides a roadmap for combination strategies. See related commentary by Johnson and Haigis, p. 4005.

Indexed as

Lung NeoplasmsProto-Oncogene Proteins p21(ras)AcetonitrilesAnimalsHumansKelch-Like ECH-Associated Protein 1MiceMutationNF-E2-Related Factor 2PiperazinesProtein Serine-Threonine KinasesPyrimidinesAcetonitrilesadagrasibKelch-Like ECH-Associated Protein 1NF-E2-Related Factor 2PiperazinesProtein Serine-Threonine KinasesProto-Oncogene Proteins p21(ras)Pyrimidines

Identifiers

PMID37729426
PMCPMC10841254
OpenAlexW4386883000

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.