Evidence map›Paper›PMID 37729182›Full record

ArticlePloS one2023

Expansion microscopy using a single anchor molecule for high-yield multiplexed imaging of proteins and RNAs.

Yi Cui, Gaojie Yang, Daniel R Goodwin, Ciara H O'Flanagan, Anubhav Sinha, Chi Zhang, Kristina E Kitko, Tay Won Shin, Demian Park, Samuel Aparicio and 2 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
4.5field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 22 citations in OpenAlex.

  1. Review
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  8. Principles ofbioRxiv : the preprint server for biology · 2026
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  17. Coaching ribosome biogenesis from the nuclear periphery.bioRxiv : the preprint server for biology · 2024
    Article
  18. Review
  19. Article
  20. Multiplex protein imaging in tumour biology.Nature reviews. Cancer · 2024
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 2 countries.

Yi CuiMcGovern Institute, Massachusetts Institute of Technology (MIT), Cambridge, Massachusetts, United States of America.ORCID 0000-0002-8597-0174
Gaojie YangMcGovern Institute, Massachusetts Institute of Technology (MIT), Cambridge, Massachusetts, United States of America.
Daniel R GoodwinMcGovern Institute, Massachusetts Institute of Technology (MIT), Cambridge, Massachusetts, United States of America.
Ciara H O'FlanaganDepartment of Molecular Oncology, BC Cancer, Vancouver, British Columbia, Canada.
Anubhav SinhaMcGovern Institute, Massachusetts Institute of Technology (MIT), Cambridge, Massachusetts, United States of America.ORCID 0000-0002-1545-3163
Chi ZhangMcGovern Institute, Massachusetts Institute of Technology (MIT), Cambridge, Massachusetts, United States of America.
Kristina E KitkoMcGovern Institute, Massachusetts Institute of Technology (MIT), Cambridge, Massachusetts, United States of America.
Tay Won ShinMcGovern Institute, Massachusetts Institute of Technology (MIT), Cambridge, Massachusetts, United States of America.ORCID 0000-0002-0061-522X
Demian ParkMcGovern Institute, Massachusetts Institute of Technology (MIT), Cambridge, Massachusetts, United States of America.
Samuel AparicioDepartment of Molecular Oncology, BC Cancer, Vancouver, British Columbia, Canada.
CRUK IMAXT Grand Challenge Consortium
Edward S BoydenMcGovern Institute, Massachusetts Institute of Technology (MIT), Cambridge, Massachusetts, United States of America.ORCID 0000-0002-0419-3351
McGovern Institute for Brain Research · USHoward Hughes Medical Institute · USUniversity of British Columbia · CA

Funding

Tool and Technology Development CoreU19MH114821 · NIMH · COLD SPRING HARBOR LABORATORY · PI ARLOTTA, PAOLA, HUANG, Z JOSH · 2017 to 2021
$64.5M
Recombinant Immunolabels for Nanoprecise Brain Mapping Across ScalesU24NS109113 · NINDS · UNIVERSITY OF CALIFORNIA AT DAVIS · PI KARL Daniel MURRAY · 2018 to 2026
$9.9M
Internal Dynamics of the Postsynaptic DensityR37MH080046 · NIMH · UNIVERSITY OF MARYLAND BALTIMORE · PI Thomas A Blanpied · 2020 to 2026
$5.0M
Expansion MicroscopyR01EB024261 · NIBIB · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI BOYDEN, EDWARD S. · 2017 to 2025
$4.6M
Neuroimaging Training ProgramT32EB001680 · NIBIB · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI BRUCE R ROSEN · 2003 to 2026
$3.8M
High-throughput approaches to local and long-range synaptic connectivityRF1MH123403 · NIMH · COLD SPRING HARBOR LABORATORY · PI BOYDEN, EDWARD S., ZADOR, ANTHONY M · 2020 to 2020
$3.3M
Mechanisms of pathology and neuronal hyperactivity in a memory circuit in Alzheimer's diseaseR01AG070831 · NIA · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI BOYDEN, EDWARD S., TSAI, LI-HUEI · 2021 to 2025
$3.2M
Multiplexed Nanoscale Protein Mapping Through Expansion Microscopy and Immuno-SABERRF1MH124606 · NIMH · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI BOYDEN, EDWARD S., YIN, PENG · 2020 to 2020
$2.7M
Cancer Research UK C31893/A25050NIA NIH HHS R01 AG070831NIBIB NIH HHS R01 EB024261NIBIB NIH HHS T32 EB001680NIMH NIH HHS R37 MH080046NIMH NIH HHS RF1 MH123403NIMH NIH HHS RF1 MH124606NIMH NIH HHS U19 MH114821NINDS NIH HHS U24 NS109113
6 · The paper itself

Abstract

Expansion microscopy (ExM), by physically enlarging specimens in an isotropic fashion, enables nanoimaging on standard light microscopes. Key to existing ExM protocols is the equipping of different kinds of molecules, with different kinds of anchoring moieties, so they can all be pulled apart from each other by polymer swelling. Here we present a multifunctional anchor, an acrylate epoxide, that enables proteins and RNAs to be equipped with anchors in a single experimental step. This reagent simplifies ExM protocols and reduces cost (by 2-10-fold for a typical multiplexed ExM experiment) compared to previous strategies for equipping RNAs with anchors. We show that this united ExM (uniExM) protocol can be used to preserve and visualize RNA transcripts, proteins in biologically relevant ultrastructures, and sets of RNA transcripts in patient-derived xenograft (PDX) cancer tissues and may support the visualization of other kinds of biomolecular species as well. uniExM may find many uses in the simple, multimodal nanoscale analysis of cells and tissues.

Indexed as

Epoxy CompoundsMicroscopyAnimalsDisease Models, AnimalHumansPolymersRNAEpoxy CompoundsPolymersRNA

Identifiers

PMID37729182
PMCPMC10511132
OpenAlexW4386884278

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.