Evidence map›Paper›PMID 37728516›Full record

ArticleCancer prevention research (Philadelphia, Pa.)2023

Methylated DNA Markers for Sporadic Colorectal and Endometrial Cancer Are Strongly Associated with Lynch Syndrome Cancers.

Rachel M Bramblet, Jamie N Bakkum-Gamez, Seth W Slettedahl, Patrick H Foote, William R Taylor, Calise K Berger, Brianna J Gysbers, Jacquelyn Arndt, Longwen Chen, Karen A Doering and 5 more

Open access · bronzeAbstract read
In one paragraph

Article in Cancer prevention research (Philadelphia, Pa.), 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.5field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 6 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 4 institutions in 1 country.

Rachel M BrambletDepartment of Obstetrics and Gynecology, Mayo Clinic, Rochester, Minnesota.ORCID 0000-0001-7120-448X
Jamie N Bakkum-GamezDepartment of Obstetrics and Gynecology, Mayo Clinic, Rochester, Minnesota.ORCID 0000-0001-7018-8625
Seth W SlettedahlDepartment of Quantitative Health Sciences, Mayo Clinic Rochester, Minnesota.ORCID 0000-0003-3398-3608
Patrick H FooteDepartment of Gastroenterology and Hepatology, Mayo Clinic, Rochester, Minnesota.ORCID 0009-0001-9877-4797
William R TaylorDepartment of Gastroenterology and Hepatology, Mayo Clinic, Rochester, Minnesota.ORCID 0009-0001-2902-0158
Calise K BergerDepartment of Gastroenterology and Hepatology, Mayo Clinic, Rochester, Minnesota.ORCID 0009-0006-1407-7895
Brianna J GysbersDepartment of Gastroenterology and Hepatology, Mayo Clinic, Rochester, Minnesota.ORCID 0000-0001-7592-8952
Jacquelyn ArndtDepartment of Gastroenterology and Hepatology, Mayo Clinic, Rochester, Minnesota.ORCID 0009-0003-5838-780X
Longwen ChenDivision of Anatomic Pathology, Mayo Clinic, Scottsdale, Arizona.ORCID 0000-0002-6837-4936
Karen A DoeringDepartment of Gastroenterology and Hepatology, Mayo Clinic, Rochester, Minnesota.ORCID 0000-0002-4769-5175
Kelli N BurgerDepartment of Quantitative Health Sciences, Mayo Clinic Rochester, Minnesota.ORCID 0009-0003-9522-2334
Douglas W MahoneyDepartment of Quantitative Health Sciences, Mayo Clinic Rochester, Minnesota.ORCID 0000-0001-5144-0645
Mark E ShermanDepartment of Quantitative Health Sciences, Mayo Clinic, Jacksonville, Florida.ORCID 0000-0002-9222-8808
John B Kisiel *Department of Gastroenterology and Hepatology, Mayo Clinic, Rochester, Minnesota.ORCID 0000-0002-3840-5324
N Jewel Samadder *Department of Gastroenterology and Hepatology, Mayo Clinic, Scottsdale, Arizona.ORCID 0009-0003-9740-9696
Mayo Clinic · USMayo Clinic in Florida · USMayo Clinic in Arizona · USJacksonville College · US

Funding

Women's Cancer ProgramP30CA015083 · NCI · MAYO CLINIC ROCHESTER · PI AKHILESH PANDEY · 1985 to 2026
$151.3M
Minimally Invasive Molecular Approaches for the Detection of Barrett’s Esophagus and Esophageal AdenocarcinomaR01CA241164 · NCI · MAYO CLINIC ROCHESTER · PI Jagpreet Chhatwal, Prasad G. Iyer · 2019 to 2026
$3.9M
Multi-site Gastrointestinal Cancer Detection by Stool DNA MethylationR37CA214679 · NCI · MAYO CLINIC ROCHESTER · PI KISIEL, JOHN · 2018 to 2024
$2.8M
Multi-cancer Early DetectionR01CA214679 · NCI · MAYO CLINIC ROCHESTER · PI John Kisiel, Niloy Jewel Samadder · 2025 to 2026
$891k
NCI NIH HHS P30 CA015083NCI NIH HHS R01 CA214679NCI NIH HHS R37 CA214679
6 · The paper itself

Abstract

Lynch syndrome (LS) markedly increases risks of colorectal and endometrial cancers. Early detection biomarkers for LS cancers could reduce the needs for invasive screening and surgical prophylaxis.To validate a panel of methylated DNA markers (MDM) previously identified in sporadic colorectal cancer and endometrial cancer for discrimination of these cancers in LS.In a case-control design, previously identified MDMs for the detection of colorectal cancer and endometrial cancer were assayed by qMSP on tissue-extracted DNA. Results were normalized to ACTB values within each sample. Least absolute shrinkage and selection operator models to classify colorectal cancer and endometrial cancer were trained on sporadic cases and controls and then applied to classify colorectal cancer and endometrial cancer, in those with LS, and cross-validated.We identified colorectal cancer cases (23 with LS, 48 sporadic), colorectal controls (32 LS, 48 sporadic), endometrial cancer cases (30 LS, 48 sporadic), and endometrial controls (29 LS, 37 sporadic). A 3-MDM panel (LASS4, LRRC4, and PPP2R5C) classified LS-CRC from LS controls with an AUC of 0.92 (0.84-0.99); results were similar for sporadic colorectal cancer. A 6-MDM panel (SFMBT2, MPZ, CYTH2, DIDO1, chr10.4479, and EMX2OS) discriminated LS-EC from LS controls with an AUC of 0.92 (0.83-1.0); the AUC for sporadic endometrial cancer versus sporadic controls was nominally higher, 0.99 (0.96-1.0).MDMs previously identified in sporadic endometrial cancer and colorectal cancer discriminate between endometrial cancer and benign endometrium and colorectal cancer and benign colorectum in LS. This supports the inclusion of patients with LS within future prospective clinical trials evaluating endometrial cancer and colorectal cancer MDMs and may provide a new avenue for cancer screening or surveillance in this high-risk population. PREVENTION RELEVANCE: Lynch syndrome (LS) markedly increases risks of colorectal and endometrial cancers. Early detection biomarkers for LS cancers could reduce the needs for invasive screening and surgery. Methylated DNA markers previously identified in sporadic endometrial cancer and colorectal cancer discriminate between benign and cancer tissue in LS.

Indexed as

Colorectal Neoplasms, Hereditary NonpolyposisEndometrial NeoplasmsEndometriumFemaleGenetic MarkersHumansMicrosatellite InstabilityRisk FactorsGenetic Markers

Identifiers

PMID37728516
PMCPMC10870731
OpenAlexW4386878062

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.